Gene annotation
Transcriptome id Sobic.006G183400.1
Synonym Sb06g025770, RBL2, ATRBL2
Functional annotation OsRhmbd11 - Putative Rhomboid homologue, expressed
UniProt C5YE36
Pfam PF01694
Panther DB PTHR22936 PTHR22936:SF31
NCBI CDD KOG2289; Rhomboid family proteins
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT2G29050 : RHOMBOID-like 1
RAP-DB (Rice) LOC_Os04g48130.1 : OsRhmbd11 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a010173 , Zm00025a047723 , Zm00025a003075
Brachypodium KQJ84106
Barley HORVU2Hr1G095170.2 , HORVU2Hr1G095170.3 , HORVU2Hr1G095170.6 , HORVU2Hr1G095170.7 , HORVU2Hr1G095170.4 , HORVU2Hr1G095170.5 , HORVU2Hr1G095170.8 , HORVU2Hr1G095170.9 , HORVU2Hr1G095170.10 , HORVU2Hr1G095170.11 , HORVU4Hr1G027850.1
Wheat TraesCS2D02G398500 , TraesCS5D02G320400 , TraesCS4A02G179600 , TraesCS2A02G401000 , TraesCS4D02G136600 , TraesCS4D02G136600 , TraesCS2B02G419100 , TraesCS4A02G176100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
2 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.005G196800 membrane protein, putative, expressed -
4 Sobic.001G247300 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
5 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
6 Sobic.003G037800 transferase family protein, putative, expressed -
7 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
8 Sobic.002G359300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-07 - C2H2 zinc finger protein, expressed -
9 Sobic.003G264500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.001G471200 membrane protein, putative, expressed -
11 Sobic.004G341800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin family protein, putative, expressed -
12 Sobic.003G050300 peroxidases (PubMedID : 28944535)@peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
14 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
15 Sobic.003G092900 expressed protein -
16 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
17 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
18 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
19 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
20 Sobic.003G300800 GA inactivating enzyme(PubMedID : 24151305)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulation in phyB-1 mutant(PubMedID : 26893475)@Expressed in older stem(PubMedID : 28649278)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase


Gene co-expression network
sample Sobic006G183400 Sobic006G183400 Sobic006G179500 Sobic006G179500 Sobic006G183400--Sobic006G179500 Sobic002G140300 Sobic002G140300 Sobic006G183400--Sobic002G140300 Sobic005G196800 Sobic005G196800 Sobic006G183400--Sobic005G196800 Sobic001G247300 Sobic001G247300 Sobic006G183400--Sobic001G247300 Sobic004G222500 Sobic004G222500 Sobic006G183400--Sobic004G222500 Sobic003G037800 Sobic003G037800 Sobic006G183400--Sobic003G037800 Sobic009G247900 Sobic009G247900 Sobic006G183400--Sobic009G247900 Sobic002G359300 Sobic002G359300 Sobic006G183400--Sobic002G359300 Sobic003G264500 Sobic003G264500 Sobic006G183400--Sobic003G264500 Sobic006G179500--Sobic002G140300 Sobic006G179500--Sobic002G359300 Sobic006G179500--Sobic006G183400 Sobic001G040200 Sobic001G040200 Sobic006G179500--Sobic001G040200 Sobic006G179500--Sobic004G222500 Sobic003G300800 Sobic003G300800 Sobic006G179500--Sobic003G300800 Sobic003G430400 Sobic003G430400 Sobic006G179500--Sobic003G430400 Sobic006G165100 Sobic006G165100 Sobic006G179500--Sobic006G165100 Sobic006G089300 Sobic006G089300 Sobic006G179500--Sobic006G089300 Sobic002G140300--Sobic006G179500 Sobic002G140300--Sobic001G040200 Sobic002G140300--Sobic006G165100 Sobic002G140300--Sobic004G222500 Sobic001G538866 Sobic001G538866 Sobic002G140300--Sobic001G538866 Sobic009G036100 Sobic009G036100 Sobic002G140300--Sobic009G036100 Sobic002G140300--Sobic006G183400 Sobic003G324400 Sobic003G324400 Sobic002G140300--Sobic003G324400 Sobic002G140300--Sobic009G247900 Sobic005G196800--Sobic001G247300 Sobic004G237800 Sobic004G237800 Sobic005G196800--Sobic004G237800 Sobic001G390300 Sobic001G390300 Sobic005G196800--Sobic001G390300 Sobic002G338500 Sobic002G338500 Sobic005G196800--Sobic002G338500 Sobic004G321300 Sobic004G321300 Sobic005G196800--Sobic004G321300 Sobic005G196800--Sobic006G183400 Sobic003G382600 Sobic003G382600 Sobic005G196800--Sobic003G382600 Sobic003G043600 Sobic003G043600 Sobic005G196800--Sobic003G043600 Sobic002G055700 Sobic002G055700 Sobic005G196800--Sobic002G055700 Sobic001G247300--Sobic005G196800 Sobic001G247300--Sobic003G043600 Sobic003G092900 Sobic003G092900 Sobic001G247300--Sobic003G092900 Sobic001G247300--Sobic004G237800 Sobic009G184000 Sobic009G184000 Sobic001G247300--Sobic009G184000 Sobic001G247300--Sobic006G183400 Sobic001G247300--Sobic002G338500 Sobic007G074000 Sobic007G074000 Sobic001G247300--Sobic007G074000 Sobic001G247300--Sobic003G382600 Sobic004G222500--Sobic002G140300 Sobic003G093000 Sobic003G093000 Sobic004G222500--Sobic003G093000 Sobic004G222500--Sobic003G092900 Sobic003G428700 Sobic003G428700 Sobic004G222500--Sobic003G428700 Sobic004G222500--Sobic006G183400 Sobic004G222500--Sobic009G247900 Sobic001G035100 Sobic001G035100 Sobic004G222500--Sobic001G035100 Sobic002G220000 Sobic002G220000 Sobic004G222500--Sobic002G220000 Sobic004G222500--Sobic006G179500 Sobic003G429000 Sobic003G429000 Sobic003G037800--Sobic003G429000 Sobic002G245100 Sobic002G245100 Sobic003G037800--Sobic002G245100 Sobic001G389000 Sobic001G389000 Sobic003G037800--Sobic001G389000 Sobic009G033700 Sobic009G033700 Sobic003G037800--Sobic009G033700 Sobic009G159400 Sobic009G159400 Sobic003G037800--Sobic009G159400 Sobic005G018700 Sobic005G018700 Sobic003G037800--Sobic005G018700 Sobic003G037800--Sobic006G183400 Sobic003G037800--Sobic004G321300 Sobic004G340900 Sobic004G340900 Sobic003G037800--Sobic004G340900 Sobic009G247900--Sobic007G074000 Sobic003G202200 Sobic003G202200 Sobic009G247900--Sobic003G202200 Sobic001G383700 Sobic001G383700 Sobic009G247900--Sobic001G383700 Sobic003G228900 Sobic003G228900 Sobic009G247900--Sobic003G228900 Sobic009G247900--Sobic003G428700 Sobic010G209200 Sobic010G209200 Sobic009G247900--Sobic010G209200 Sobic009G247900--Sobic009G036100 Sobic009G036000 Sobic009G036000 Sobic009G247900--Sobic009G036000 Sobic004G341800 Sobic004G341800 Sobic009G247900--Sobic004G341800 Sobic002G359300--Sobic001G040200 Sobic002G359300--Sobic006G179500 Sobic002G359300--Sobic002G140300 Sobic002G359300--Sobic006G183400 Sobic002G195900 Sobic002G195900 Sobic002G359300--Sobic002G195900 Sobic002G359300--Sobic003G430400 Sobic002G359300--Sobic003G264500 Sobic002G359300--Sobic006G089300 Sobic009G183300 Sobic009G183300 Sobic002G359300--Sobic009G183300 Sobic004G208700 Sobic004G208700 Sobic003G264500--Sobic004G208700 Sobic003G264500--Sobic009G159400 Sobic003G264500--Sobic006G183400 Sobic003G264500--Sobic002G359300 Sobic003G264500--Sobic003G037800 Sobic003G264500--Sobic004G237800 Sobic007G155000 Sobic007G155000 Sobic003G264500--Sobic007G155000 Sobic003G264500--Sobic001G247300 Sobic003G264500--Sobic007G074000
Octagon: transcription factors


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