Gene annotation
| Transcriptome id | Sobic.003G300800.1 |
|---|---|
| Synonym | SbGA2ox3;GA2ox1;GA2ox1, SbGA2 oxidase 3, ATGA2OX1, SbGA2ox3;SbGA2 oxidase 3, GA2OX1, Sb03g035000 |
| Functional annotation | GA inactivating enzyme (PubMedID : 24151305) SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) Up-regulation in phyB-1 mutant (PubMedID : 26893475) Expressed in older stem (PubMedID : 28649278) gibberellin 2-beta-dioxygenase, putative, expressed |
| UniProt | C5XK83 |
| Pfam | PF14226 PF03171 |
| Panther DB | PTHR10209 PTHR10209:SF171 |
| NCBI CDD | KOG0143; Iron/ascorbate family oxidoreductases |
| KEGG Orthology | K04125; gibberellin 2beta-dioxygenase |
| Gene Ontology | GO:0016491; oxidoreductase activity |
Orthologs (automatic annotation)
| TAIR | AT1G78440 : Arabidopsis thaliana gibberellin 2-oxidase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g55240.1 : gibberellin 2-beta-dioxygenase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a044221 , Zm00025a027518 , Zm00025a040019 |
| Brachypodium | KQK09810 , KQK03260 |
| Barley | HORVU3Hr1G029010.3 , HORVU3Hr1G029010.2 , HORVU3Hr1G029010.1 , HORVU3Hr1G029010.7 , HORVU3Hr1G029010.6 , HORVU3Hr1G029010.5 , HORVU3Hr1G029010.4 , HORVU3Hr1G029010.9 , HORVU3Hr1G029010.8 , HORVU3Hr1G072810.3 , HORVU3Hr1G072810.2 , HORVU3Hr1G072810.1 , HORVU3Hr1G072810.7 , HORVU3Hr1G072810.6 , HORVU3Hr1G072810.5 , HORVU3Hr1G072810.4 , HORVU3Hr1G072810.8 |
| Wheat | TraesCS3B02G166100 , TraesCS3B02G328700 , TraesCS3A02G294000 , TraesCS3D02G149600 , TraesCS3D02G293800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G179500 | protein kinase APK1B, chloroplast precursor, putative, expressed | - |
| 2 | Sobic.002G140300 | plastocyanin-like domain containing protein, putative, expressed | - |
| 3 | Sobic.002G359300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-07 - C2H2 zinc finger protein, expressed | - |
| 4 | Sobic.006G183400 | OsRhmbd11 - Putative Rhomboid homologue, expressed | - |
| 5 | Sobic.009G036100 | similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed | - |
| 6 | Sobic.008G177800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed | K10712: cysteamine dioxygenase |
| 7 | Sobic.001G040200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed | - |
| 8 | Sobic.010G178500 | Expressed in drought and heat(PubMedID : 29862293)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@endothelial differentiation-related factor 1, putative, expressed | K03627: putative transcription factor |
| 9 | Sobic.002G294700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 10 | Sobic.001G258300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 11 | Sobic.006G231100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed | - |
| 12 | Sobic.007G107850 | - | - |
| 13 | Sobic.001G424200 | protein kinase, putative, expressed | - |
| 14 | Sobic.006G231200 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed | - |
| 15 | Sobic.009G183300 | glycerol-3-phosphate dehydrogenase, putative, expressed | K00006: glycerol-3-phosphate dehydrogenase (NAD+) |
| 16 | Sobic.001G516600 | AMP-binding domain containing protein, expressed | K10526: OPC-8:0 CoA ligase 1 |
| 17 | Sobic.003G158500 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed | - |
| 18 | Sobic.003G094200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alanyl-tRNA synthetase, putative, expressed | - |
| 19 | Sobic.001G107400 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
| 20 | Sobic.002G140400 | plastocyanin-like domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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