Gene annotation
Transcriptome id Sobic.001G424200.1,Sobic.001G424200.2
Synonym PERK1, ATPERK1, Sb01g039870
Functional annotation protein kinase, putative, expressed
UniProt A0A1Z5SAB6 , A0A1B6QP58
Pfam PF00069
Panther DB PTHR27001 PTHR27001:SF200
NCBI CDD KOG1187; Serine/threonine protein kinase KOG0580Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G70460 : root hair specific 10
RAP-DB (Rice) LOC_Os03g16260.1 : protein kinase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alanyl-tRNA synthetase, putative, expressed -
2 Sobic.006G231332 - -
3 Sobic.003G300800 GA inactivating enzyme(PubMedID : 24151305)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulation in phyB-1 mutant(PubMedID : 26893475)@Expressed in older stem(PubMedID : 28649278)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
4 Sobic.010G178500 Expressed in drought and heat(PubMedID : 29862293)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@endothelial differentiation-related factor 1, putative, expressed K03627: putative transcription factor
5 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
6 Sobic.004G249900 - -
7 Sobic.004G048100 expressed protein -
8 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
9 Sobic.004G036600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@activator of 90 kDa heat shock protein ATPase homolog, putative, expressed -
10 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.005G122500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@IQ calmodulin-binding and BAG domain containing protein, putative, expressed -
12 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
13 Sobic.004G333900 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
14 Sobic.008G074900 - -
15 Sobic.009G121300 transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
16 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
17 Sobic.003G288600 reticulon domain containing protein, putative, expressed -
18 Sobic.002G415600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed K09286: EREBP-like factor
19 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
20 Sobic.009G183300 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)


Gene co-expression network
sample Sobic001G424200 Sobic001G424200 Sobic003G094200 Sobic003G094200 Sobic001G424200--Sobic003G094200 Sobic006G231332 Sobic006G231332 Sobic001G424200--Sobic006G231332 Sobic003G300800 Sobic003G300800 Sobic001G424200--Sobic003G300800 Sobic010G178500 Sobic010G178500 Sobic001G424200--Sobic010G178500 Sobic002G294700 Sobic002G294700 Sobic001G424200--Sobic002G294700 Sobic004G249900 Sobic004G249900 Sobic001G424200--Sobic004G249900 Sobic004G048100 Sobic004G048100 Sobic001G424200--Sobic004G048100 Sobic008G177800 Sobic008G177800 Sobic001G424200--Sobic008G177800 Sobic004G036600 Sobic004G036600 Sobic001G424200--Sobic004G036600 Sobic003G094200--Sobic001G424200 Sobic003G094200--Sobic010G178500 Sobic002G104900 Sobic002G104900 Sobic003G094200--Sobic002G104900 Sobic009G141800 Sobic009G141800 Sobic003G094200--Sobic009G141800 Sobic001G124600 Sobic001G124600 Sobic003G094200--Sobic001G124600 Sobic001G015100 Sobic001G015100 Sobic003G094200--Sobic001G015100 Sobic006G131400 Sobic006G131400 Sobic003G094200--Sobic006G131400 Sobic009G217000 Sobic009G217000 Sobic003G094200--Sobic009G217000 Sobic003G094200--Sobic004G036600 Sobic010G234600 Sobic010G234600 Sobic006G231332--Sobic010G234600 Sobic002G415600 Sobic002G415600 Sobic006G231332--Sobic002G415600 Sobic006G231100 Sobic006G231100 Sobic006G231332--Sobic006G231100 Sobic006G231200 Sobic006G231200 Sobic006G231332--Sobic006G231200 Sobic006G231332--Sobic008G177800 Sobic010G217800 Sobic010G217800 Sobic006G231332--Sobic010G217800 Sobic009G111200 Sobic009G111200 Sobic006G231332--Sobic009G111200 Sobic006G230900 Sobic006G230900 Sobic006G231332--Sobic006G230900 Sobic006G231332--Sobic001G424200 Sobic006G179500 Sobic006G179500 Sobic003G300800--Sobic006G179500 Sobic002G140300 Sobic002G140300 Sobic003G300800--Sobic002G140300 Sobic002G359300 Sobic002G359300 Sobic003G300800--Sobic002G359300 Sobic006G183400 Sobic006G183400 Sobic003G300800--Sobic006G183400 Sobic009G036100 Sobic009G036100 Sobic003G300800--Sobic009G036100 Sobic003G300800--Sobic008G177800 Sobic001G040200 Sobic001G040200 Sobic003G300800--Sobic001G040200 Sobic003G300800--Sobic010G178500 Sobic003G300800--Sobic002G294700 Sobic001G317000 Sobic001G317000 Sobic010G178500--Sobic001G317000 Sobic002G140400 Sobic002G140400 Sobic010G178500--Sobic002G140400 Sobic010G178500--Sobic002G104900 Sobic007G145600 Sobic007G145600 Sobic010G178500--Sobic007G145600 Sobic010G178500--Sobic001G124600 Sobic010G178500--Sobic003G094200 Sobic004G189400 Sobic004G189400 Sobic010G178500--Sobic004G189400 Sobic001G423800 Sobic001G423800 Sobic010G178500--Sobic001G423800 Sobic002G263400 Sobic002G263400 Sobic010G178500--Sobic002G263400 Sobic002G294700--Sobic008G177800 Sobic002G294700--Sobic010G234600 Sobic002G294700--Sobic006G231100 Sobic002G374100 Sobic002G374100 Sobic002G294700--Sobic002G374100 Sobic004G286600 Sobic004G286600 Sobic002G294700--Sobic004G286600 Sobic001G077700 Sobic001G077700 Sobic002G294700--Sobic001G077700 Sobic010G246000 Sobic010G246000 Sobic002G294700--Sobic010G246000 Sobic002G294700--Sobic004G036600 Sobic002G278500 Sobic002G278500 Sobic002G294700--Sobic002G278500 Sobic005G122500 Sobic005G122500 Sobic004G249900--Sobic005G122500 Sobic004G228900 Sobic004G228900 Sobic004G249900--Sobic004G228900 Sobic001G093200 Sobic001G093200 Sobic004G249900--Sobic001G093200 Sobic004G249900--Sobic002G278500 Sobic001G426000 Sobic001G426000 Sobic004G249900--Sobic001G426000 Sobic004G249900--Sobic001G424200 Sobic004G249900--Sobic004G036600 Sobic003G310700 Sobic003G310700 Sobic004G249900--Sobic003G310700 Sobic004G249900--Sobic003G094200 Sobic010G234700 Sobic010G234700 Sobic004G048100--Sobic010G234700 Sobic004G048100--Sobic001G424200 Sobic004G048100--Sobic002G415600 Sobic004G048100--Sobic010G234600 Sobic004G048100--Sobic010G217800 Sobic001G101500 Sobic001G101500 Sobic004G048100--Sobic001G101500 Sobic004G048100--Sobic006G231332 Sobic008G074900 Sobic008G074900 Sobic004G048100--Sobic008G074900 Sobic004G199300 Sobic004G199300 Sobic004G048100--Sobic004G199300 Sobic008G177800--Sobic002G294700 Sobic008G177800--Sobic006G231100 Sobic008G177800--Sobic010G234600 Sobic008G177800--Sobic004G286600 Sobic008G177800--Sobic002G415600 Sobic008G177800--Sobic010G217800 Sobic009G255500 Sobic009G255500 Sobic008G177800--Sobic009G255500 Sobic008G177800--Sobic006G230900 Sobic008G177800--Sobic001G077700 Sobic004G036600--Sobic002G294700 Sobic004G036600--Sobic008G177800 Sobic004G036600--Sobic006G231100 Sobic001G173300 Sobic001G173300 Sobic004G036600--Sobic001G173300 Sobic004G036600--Sobic010G234600 Sobic001G516600 Sobic001G516600 Sobic004G036600--Sobic001G516600 Sobic004G036600--Sobic002G374100 Sobic004G036600--Sobic009G141800 Sobic004G036600--Sobic009G217000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.