Gene annotation
Transcriptome id Sobic.003G288600.1
Synonym RTNLB1, BTI1, Sb03g033920
Functional annotation reticulon domain containing protein, putative, expressed
UniProt A0A1B6Q5Y2
Pfam PF02453
Panther DB PTHR10994 PTHR10994:SF78
NCBI CDD KOG1792; Reticulon
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G23630 : VIRB2-interacting protein 1
RAP-DB (Rice) LOC_Os05g45050.1 : reticulon domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a027683 , Zm00025a040081
Brachypodium KQK05289
Barley HORVU3Hr1G069970.4 , HORVU3Hr1G069970.5 , HORVU3Hr1G069970.6 , HORVU3Hr1G069970.7 , HORVU3Hr1G069970.1 , HORVU3Hr1G069970.2 , HORVU3Hr1G069970.3 , HORVU3Hr1G069970.8 , HORVU1Hr1G082010.2 , HORVU1Hr1G082010.3 , HORVU1Hr1G082010.1
Wheat TraesCS1D02G349700 , TraesCS3D02G279100 , TraesCS3B02G313000 , TraesCS1A02G346800 , TraesCS1A02G346800 , TraesCS1B02G360800
Populus -


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cDNA sequences
Sobic.003G288600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
2 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.010G220200 haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed -
4 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
5 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
6 Sobic.009G141800 cytochrome c, putative, expressed K08738: cytochrome c
7 Sobic.002G415600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed K09286: EREBP-like factor
8 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
9 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
10 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
11 Sobic.010G086200 GRAM domain containing protein, expressed -
12 Sobic.005G103500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed -
13 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
14 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
15 Sobic.003G387000 expressed protein -
16 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
17 Sobic.010G149300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
18 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
19 Sobic.009G183300 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
20 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -


Gene co-expression network
sample Sobic003G288600 Sobic003G288600 Sobic006G267200 Sobic006G267200 Sobic003G288600--Sobic006G267200 Sobic010G217800 Sobic010G217800 Sobic003G288600--Sobic010G217800 Sobic010G220200 Sobic010G220200 Sobic003G288600--Sobic010G220200 Sobic006G231100 Sobic006G231100 Sobic003G288600--Sobic006G231100 Sobic008G177800 Sobic008G177800 Sobic003G288600--Sobic008G177800 Sobic009G141800 Sobic009G141800 Sobic003G288600--Sobic009G141800 Sobic002G415600 Sobic002G415600 Sobic003G288600--Sobic002G415600 Sobic001G477300 Sobic001G477300 Sobic003G288600--Sobic001G477300 Sobic005G103300 Sobic005G103300 Sobic003G288600--Sobic005G103300 Sobic001G459800 Sobic001G459800 Sobic006G267200--Sobic001G459800 Sobic004G065500 Sobic004G065500 Sobic006G267200--Sobic004G065500 Sobic003G393900 Sobic003G393900 Sobic006G267200--Sobic003G393900 Sobic001G405500 Sobic001G405500 Sobic006G267200--Sobic001G405500 Sobic006G267200--Sobic009G141800 Sobic010G086200 Sobic010G086200 Sobic006G267200--Sobic010G086200 Sobic004G146000 Sobic004G146000 Sobic006G267200--Sobic004G146000 Sobic004G141200 Sobic004G141200 Sobic006G267200--Sobic004G141200 Sobic001G320900 Sobic001G320900 Sobic006G267200--Sobic001G320900 Sobic010G217800--Sobic002G415600 Sobic006G230900 Sobic006G230900 Sobic010G217800--Sobic006G230900 Sobic003G144700 Sobic003G144700 Sobic010G217800--Sobic003G144700 Sobic003G123600 Sobic003G123600 Sobic010G217800--Sobic003G123600 Sobic006G231200 Sobic006G231200 Sobic010G217800--Sobic006G231200 Sobic010G217800--Sobic006G231100 Sobic010G217800--Sobic006G267200 Sobic010G217800--Sobic010G220200 Sobic010G217800--Sobic008G177800 Sobic010G220200--Sobic010G217800 Sobic005G010200 Sobic005G010200 Sobic010G220200--Sobic005G010200 Sobic010G220200--Sobic002G415600 Sobic006G190500 Sobic006G190500 Sobic010G220200--Sobic006G190500 Sobic006G230800 Sobic006G230800 Sobic010G220200--Sobic006G230800 Sobic010G220200--Sobic003G288600 Sobic010G220200--Sobic006G231100 Sobic010G220200--Sobic008G177800 Sobic010G220200--Sobic006G230900 Sobic006G231100--Sobic008G177800 Sobic006G231100--Sobic006G230900 Sobic006G231100--Sobic006G231200 Sobic006G231100--Sobic010G217800 Sobic006G231100--Sobic002G415600 Sobic010G234600 Sobic010G234600 Sobic006G231100--Sobic010G234600 Sobic004G286600 Sobic004G286600 Sobic006G231100--Sobic004G286600 Sobic002G294700 Sobic002G294700 Sobic006G231100--Sobic002G294700 Sobic002G282300 Sobic002G282300 Sobic006G231100--Sobic002G282300 Sobic008G177800--Sobic002G294700 Sobic008G177800--Sobic006G231100 Sobic008G177800--Sobic010G234600 Sobic008G177800--Sobic004G286600 Sobic008G177800--Sobic002G415600 Sobic008G177800--Sobic010G217800 Sobic009G255500 Sobic009G255500 Sobic008G177800--Sobic009G255500 Sobic008G177800--Sobic006G230900 Sobic001G077700 Sobic001G077700 Sobic008G177800--Sobic001G077700 Sobic009G141800--Sobic006G267200 Sobic009G141800--Sobic010G086200 Sobic009G141800--Sobic003G393900 Sobic009G141800--Sobic004G065500 Sobic004G187900 Sobic004G187900 Sobic009G141800--Sobic004G187900 Sobic001G281400 Sobic001G281400 Sobic009G141800--Sobic001G281400 Sobic009G008900 Sobic009G008900 Sobic009G141800--Sobic009G008900 Sobic003G387000 Sobic003G387000 Sobic009G141800--Sobic003G387000 Sobic009G141800--Sobic001G459800 Sobic002G415600--Sobic010G217800 Sobic002G415600--Sobic003G123600 Sobic002G415600--Sobic006G230900 Sobic002G415600--Sobic003G144700 Sobic010G234700 Sobic010G234700 Sobic002G415600--Sobic010G234700 Sobic002G415600--Sobic006G190500 Sobic002G415600--Sobic006G231100 Sobic002G415600--Sobic008G177800 Sobic002G415600--Sobic010G234600 Sobic001G124600 Sobic001G124600 Sobic001G477300--Sobic001G124600 Sobic001G477300--Sobic004G187900 Sobic002G046100 Sobic002G046100 Sobic001G477300--Sobic002G046100 Sobic001G308300 Sobic001G308300 Sobic001G477300--Sobic001G308300 Sobic001G477300--Sobic010G086200 Sobic001G477300--Sobic006G267200 Sobic009G129000 Sobic009G129000 Sobic001G477300--Sobic009G129000 Sobic009G159400 Sobic009G159400 Sobic001G477300--Sobic009G159400 Sobic001G477300--Sobic004G065500 Sobic002G414600 Sobic002G414600 Sobic005G103300--Sobic002G414600 Sobic005G103500 Sobic005G103500 Sobic005G103300--Sobic005G103500 Sobic003G334600 Sobic003G334600 Sobic005G103300--Sobic003G334600 Sobic005G103300--Sobic003G387000 Sobic001G252300 Sobic001G252300 Sobic005G103300--Sobic001G252300 Sobic001G097600 Sobic001G097600 Sobic005G103300--Sobic001G097600 Sobic001G119000 Sobic001G119000 Sobic005G103300--Sobic001G119000 Sobic002G082600 Sobic002G082600 Sobic005G103300--Sobic002G082600 Sobic002G359300 Sobic002G359300 Sobic005G103300--Sobic002G359300
Octagon: transcription factors


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