Gene annotation
Transcriptome id Sobic.002G415600.1
Synonym ATEBP, RAP2.3, EBP, Sb02g042760, SbERF32;prominent TF regulators with AP2 domain for host defense,ethylene response factor 32, ERF72
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
Not investigated (PubMedID : 23766026)
transcription factor (PubMedID : 30367619)
AP2 domain containing protein, expressed
UniProt C5X5J3
Pfam PF00847
Panther DB PTHR31190
NCBI CDD -
KEGG Orthology K09286; EREBP-like factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G16770 : ethylene-responsive element binding protein
RAP-DB (Rice) LOC_Os07g47790.2 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049133 , Zm00025a020881 , Zm00025a036079 , Zm00025a000949
Brachypodium KQK14670 , KQK23628
Barley HORVU6Hr1G080340.12 , HORVU2Hr1G018830.1 , HORVU5Hr1G080790.4 , HORVU5Hr1G080790.3 , HORVU5Hr1G080790.2 , HORVU5Hr1G080790.1 , HORVU4Hr1G000700.1 , HORVU4Hr1G000700.2
Wheat TraesCS3B02G412500 , TraesCS2B02G127800 , TraesCS5A02G314600 , TraesCS2A02G109800 , TraesCS5B02G315500 , TraesCS5D02G320800 , TraesCS5B02G315500 , TraesCS2D02G110000 , TraesCS2D02G110000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G230900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
4 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
5 Sobic.010G234700 expressed protein -
6 Sobic.006G190500 expressed protein -
7 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
8 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
9 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
10 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
11 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
12 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
14 Sobic.009G111200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
15 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
17 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
18 Sobic.010G220200 haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed -
19 Sobic.006G231332 - -
20 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -


Gene co-expression network
sample Sobic002G415600 Sobic002G415600 Sobic010G217800 Sobic010G217800 Sobic002G415600--Sobic010G217800 Sobic003G123600 Sobic003G123600 Sobic002G415600--Sobic003G123600 Sobic006G230900 Sobic006G230900 Sobic002G415600--Sobic006G230900 Sobic003G144700 Sobic003G144700 Sobic002G415600--Sobic003G144700 Sobic010G234700 Sobic010G234700 Sobic002G415600--Sobic010G234700 Sobic006G190500 Sobic006G190500 Sobic002G415600--Sobic006G190500 Sobic006G231100 Sobic006G231100 Sobic002G415600--Sobic006G231100 Sobic008G177800 Sobic008G177800 Sobic002G415600--Sobic008G177800 Sobic010G234600 Sobic010G234600 Sobic002G415600--Sobic010G234600 Sobic010G217800--Sobic002G415600 Sobic010G217800--Sobic006G230900 Sobic010G217800--Sobic003G144700 Sobic010G217800--Sobic003G123600 Sobic006G231200 Sobic006G231200 Sobic010G217800--Sobic006G231200 Sobic010G217800--Sobic006G231100 Sobic006G267200 Sobic006G267200 Sobic010G217800--Sobic006G267200 Sobic010G220200 Sobic010G220200 Sobic010G217800--Sobic010G220200 Sobic010G217800--Sobic008G177800 Sobic003G148600 Sobic003G148600 Sobic003G123600--Sobic003G148600 Sobic001G107800 Sobic001G107800 Sobic003G123600--Sobic001G107800 Sobic003G123600--Sobic002G415600 Sobic003G197200 Sobic003G197200 Sobic003G123600--Sobic003G197200 Sobic003G123600--Sobic003G144700 Sobic001G076100 Sobic001G076100 Sobic003G123600--Sobic001G076100 Sobic006G230800 Sobic006G230800 Sobic003G123600--Sobic006G230800 Sobic003G123600--Sobic006G190500 Sobic001G443800 Sobic001G443800 Sobic003G123600--Sobic001G443800 Sobic006G230900--Sobic006G231200 Sobic006G230900--Sobic006G231100 Sobic002G282300 Sobic002G282300 Sobic006G230900--Sobic002G282300 Sobic007G213800 Sobic007G213800 Sobic006G230900--Sobic007G213800 Sobic006G230900--Sobic010G217800 Sobic006G230900--Sobic002G415600 Sobic006G230900--Sobic003G144700 Sobic006G230900--Sobic003G123600 Sobic006G230900--Sobic003G197200 Sobic003G144700--Sobic003G197200 Sobic003G144700--Sobic003G148600 Sobic003G144700--Sobic007G213800 Sobic001G320900 Sobic001G320900 Sobic003G144700--Sobic001G320900 Sobic003G355100 Sobic003G355100 Sobic003G144700--Sobic003G355100 Sobic001G391500 Sobic001G391500 Sobic003G144700--Sobic001G391500 Sobic009G169000 Sobic009G169000 Sobic003G144700--Sobic009G169000 Sobic003G144700--Sobic003G123600 Sobic003G144700--Sobic006G230900 Sobic010G234700--Sobic010G234600 Sobic010G234700--Sobic002G415600 Sobic004G199300 Sobic004G199300 Sobic010G234700--Sobic004G199300 Sobic001G077700 Sobic001G077700 Sobic010G234700--Sobic001G077700 Sobic010G234700--Sobic010G217800 Sobic010G234700--Sobic006G230900 Sobic010G234700--Sobic008G177800 Sobic010G234700--Sobic003G123600 Sobic010G234700--Sobic006G190500 Sobic006G190500--Sobic006G230800 Sobic006G190500--Sobic003G123600 Sobic006G190100 Sobic006G190100 Sobic006G190500--Sobic006G190100 Sobic006G190500--Sobic002G415600 Sobic006G190500--Sobic006G230900 Sobic009G111200 Sobic009G111200 Sobic006G190500--Sobic009G111200 Sobic006G190500--Sobic010G217800 Sobic006G190500--Sobic003G144700 Sobic006G190500--Sobic010G220200 Sobic006G231100--Sobic008G177800 Sobic006G231100--Sobic006G230900 Sobic006G231100--Sobic006G231200 Sobic006G231100--Sobic010G217800 Sobic006G231100--Sobic002G415600 Sobic006G231100--Sobic010G234600 Sobic004G286600 Sobic004G286600 Sobic006G231100--Sobic004G286600 Sobic002G294700 Sobic002G294700 Sobic006G231100--Sobic002G294700 Sobic006G231100--Sobic002G282300 Sobic008G177800--Sobic002G294700 Sobic008G177800--Sobic006G231100 Sobic008G177800--Sobic010G234600 Sobic008G177800--Sobic004G286600 Sobic008G177800--Sobic002G415600 Sobic008G177800--Sobic010G217800 Sobic009G255500 Sobic009G255500 Sobic008G177800--Sobic009G255500 Sobic008G177800--Sobic006G230900 Sobic008G177800--Sobic001G077700 Sobic010G234600--Sobic010G234700 Sobic010G234600--Sobic008G177800 Sobic010G234600--Sobic001G077700 Sobic010G234600--Sobic006G231100 Sobic010G234600--Sobic002G294700 Sobic010G234600--Sobic002G415600 Sobic006G231332 Sobic006G231332 Sobic010G234600--Sobic006G231332 Sobic009G071800 Sobic009G071800 Sobic010G234600--Sobic009G071800 Sobic002G248100 Sobic002G248100 Sobic010G234600--Sobic002G248100
Octagon: transcription factors


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