Gene annotation
Transcriptome id Sobic.006G230900.1
Synonym Sb06g029870
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
wound induced protein, putative, expressed
UniProt C5YGQ3
Pfam PF12609
Panther DB PTHR33090
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G10265 : Wound-responsive family protein
RAP-DB (Rice) LOC_Os04g54240.1 : wound induced protein, putative, expressed
MaizeGDB (Corn) Zm00025a018162 , Zm00025a009631 , Zm00025a009630 , Zm00025a034849
Brachypodium KQK17212 , KQJ84834 , KQJ84833 , KQJ93436 , KQJ84831 , KQJ84830 , KQJ84832
Barley HORVU2Hr1G108780.1 , HORVU2Hr1G108730.1 , HORVU2Hr1G116780.1 , HORVU2Hr1G116800.1 , HORVU2Hr1G116800.2 , HORVU2Hr1G116800.3 , HORVU2Hr1G116800.4 , HORVU2Hr1G116700.1 , HORVU6Hr1G025830.1
Wheat TraesCS2A02G531300 , TraesCS2D02G532000
Populus -


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cDNA sequences
Sobic.006G230900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
2 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
3 Sobic.002G282300 expressed protein -
4 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
5 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G415600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
8 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
10 Sobic.006G190500 expressed protein -
11 Sobic.001G205350 - -
12 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
13 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
14 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
15 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
16 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
18 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
19 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
20 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -


Gene co-expression network
sample Sobic006G230900 Sobic006G230900 Sobic006G231200 Sobic006G231200 Sobic006G230900--Sobic006G231200 Sobic006G231100 Sobic006G231100 Sobic006G230900--Sobic006G231100 Sobic002G282300 Sobic002G282300 Sobic006G230900--Sobic002G282300 Sobic007G213800 Sobic007G213800 Sobic006G230900--Sobic007G213800 Sobic010G217800 Sobic010G217800 Sobic006G230900--Sobic010G217800 Sobic002G415600 Sobic002G415600 Sobic006G230900--Sobic002G415600 Sobic003G144700 Sobic003G144700 Sobic006G230900--Sobic003G144700 Sobic003G123600 Sobic003G123600 Sobic006G230900--Sobic003G123600 Sobic003G197200 Sobic003G197200 Sobic006G230900--Sobic003G197200 Sobic006G231200--Sobic006G230900 Sobic006G231200--Sobic006G231100 Sobic006G231200--Sobic007G213800 Sobic001G459800 Sobic001G459800 Sobic006G231200--Sobic001G459800 Sobic006G231200--Sobic010G217800 Sobic006G231200--Sobic003G144700 Sobic006G267200 Sobic006G267200 Sobic006G231200--Sobic006G267200 Sobic006G231200--Sobic002G282300 Sobic001G320900 Sobic001G320900 Sobic006G231200--Sobic001G320900 Sobic008G177800 Sobic008G177800 Sobic006G231100--Sobic008G177800 Sobic006G231100--Sobic006G230900 Sobic006G231100--Sobic006G231200 Sobic006G231100--Sobic010G217800 Sobic006G231100--Sobic002G415600 Sobic010G234600 Sobic010G234600 Sobic006G231100--Sobic010G234600 Sobic004G286600 Sobic004G286600 Sobic006G231100--Sobic004G286600 Sobic002G294700 Sobic002G294700 Sobic006G231100--Sobic002G294700 Sobic006G231100--Sobic002G282300 Sobic002G282300--Sobic006G230900 Sobic002G282300--Sobic007G213800 Sobic001G205350 Sobic001G205350 Sobic002G282300--Sobic001G205350 Sobic001G338600 Sobic001G338600 Sobic002G282300--Sobic001G338600 Sobic002G282300--Sobic003G144700 Sobic002G282300--Sobic003G197200 Sobic002G282300--Sobic006G231200 Sobic002G282300--Sobic001G320900 Sobic004G169200 Sobic004G169200 Sobic002G282300--Sobic004G169200 Sobic007G213800--Sobic003G144700 Sobic001G391500 Sobic001G391500 Sobic007G213800--Sobic001G391500 Sobic007G213800--Sobic002G282300 Sobic007G213800--Sobic006G230900 Sobic007G213800--Sobic003G197200 Sobic001G138600 Sobic001G138600 Sobic007G213800--Sobic001G138600 Sobic007G213800--Sobic006G231200 Sobic010G209200 Sobic010G209200 Sobic007G213800--Sobic010G209200 Sobic007G213800--Sobic001G459800 Sobic010G217800--Sobic002G415600 Sobic010G217800--Sobic006G230900 Sobic010G217800--Sobic003G144700 Sobic010G217800--Sobic003G123600 Sobic010G217800--Sobic006G231200 Sobic010G217800--Sobic006G231100 Sobic010G217800--Sobic006G267200 Sobic010G220200 Sobic010G220200 Sobic010G217800--Sobic010G220200 Sobic010G217800--Sobic008G177800 Sobic002G415600--Sobic010G217800 Sobic002G415600--Sobic003G123600 Sobic002G415600--Sobic006G230900 Sobic002G415600--Sobic003G144700 Sobic010G234700 Sobic010G234700 Sobic002G415600--Sobic010G234700 Sobic006G190500 Sobic006G190500 Sobic002G415600--Sobic006G190500 Sobic002G415600--Sobic006G231100 Sobic002G415600--Sobic008G177800 Sobic002G415600--Sobic010G234600 Sobic003G144700--Sobic003G197200 Sobic003G148600 Sobic003G148600 Sobic003G144700--Sobic003G148600 Sobic003G144700--Sobic007G213800 Sobic003G144700--Sobic001G320900 Sobic003G355100 Sobic003G355100 Sobic003G144700--Sobic003G355100 Sobic003G144700--Sobic001G391500 Sobic009G169000 Sobic009G169000 Sobic003G144700--Sobic009G169000 Sobic003G144700--Sobic003G123600 Sobic003G144700--Sobic006G230900 Sobic003G123600--Sobic003G148600 Sobic001G107800 Sobic001G107800 Sobic003G123600--Sobic001G107800 Sobic003G123600--Sobic002G415600 Sobic003G123600--Sobic003G197200 Sobic003G123600--Sobic003G144700 Sobic001G076100 Sobic001G076100 Sobic003G123600--Sobic001G076100 Sobic006G230800 Sobic006G230800 Sobic003G123600--Sobic006G230800 Sobic003G123600--Sobic006G190500 Sobic001G443800 Sobic001G443800 Sobic003G123600--Sobic001G443800 Sobic003G197200--Sobic003G148600 Sobic007G214600 Sobic007G214600 Sobic003G197200--Sobic007G214600 Sobic003G197200--Sobic003G355100 Sobic003G197200--Sobic003G144700 Sobic003G197200--Sobic001G443800 Sobic001G481300 Sobic001G481300 Sobic003G197200--Sobic001G481300 Sobic001G201200 Sobic001G201200 Sobic003G197200--Sobic001G201200 Sobic004G109600 Sobic004G109600 Sobic003G197200--Sobic004G109600 Sobic003G197200--Sobic003G123600
Octagon: transcription factors


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