Gene annotation
Transcriptome id Sobic.001G443800.1
Synonym GAD, Sb01g041700, GAD1
Functional annotation glutamate decarboxylase, putative, expressed
UniProt C5WRM9
Pfam PF00282
Panther DB PTHR11999 PTHR11999:SF86
NCBI CDD -
KEGG Orthology K01580; E4.1.1.15, gadB, gadA, glutamate decarboxylase
Gene Ontology GO:0016831; carboxy-lyase activity


Orthologs (automatic annotation)
TAIR AT5G17330 : glutamate decarboxylase
RAP-DB (Rice) LOC_Os03g13300.1 : glutamate decarboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a005384 , Zm00025a052950 , Zm00025a007922 , Zm00025a011205 , Zm00025a011196
Brachypodium KQK13491 , KQJ98585 , PNT77787 , KQJ82857 , KQK22684 , KQJ82853
Barley HORVU3Hr1G003050.7 , HORVU3Hr1G003050.6 , HORVU3Hr1G003050.5 , HORVU3Hr1G003050.4 , HORVU3Hr1G003050.3 , HORVU3Hr1G003050.2 , HORVU3Hr1G003050.1 , HORVU2Hr1G078580.8 , HORVU2Hr1G078580.9 , HORVU2Hr1G078580.2 , HORVU2Hr1G078580.3 , HORVU2Hr1G078580.1 , HORVU2Hr1G078580.6 , HORVU2Hr1G078580.7 , HORVU2Hr1G078580.4 , HORVU2Hr1G078580.5 , HORVU2Hr1G078560.1 , HORVU2Hr1G078560.2 , HORVU2Hr1G078560.3 , HORVU2Hr1G078560.4 , HORVU2Hr1G078560.5 , HORVU2Hr1G078560.6 , HORVU2Hr1G078580.11 , HORVU2Hr1G078580.17 , HORVU2Hr1G078560.7 , HORVU4Hr1G064790.14 , HORVU4Hr1G064790.12 , HORVU4Hr1G064790.13 , HORVU4Hr1G064790.10 , HORVU4Hr1G064790.11 , HORVU4Hr1G008700.9 , HORVU4Hr1G008700.8 , HORVU4Hr1G064790.4 , HORVU4Hr1G064790.5 , HORVU4Hr1G064790.6 , HORVU4Hr1G064790.1 , HORVU4Hr1G064790.2 , HORVU4Hr1G064790.3 , HORVU4Hr1G008700.1 , HORVU4Hr1G008700.3 , HORVU4Hr1G008700.2 , HORVU4Hr1G008700.5 , HORVU4Hr1G008700.4 , HORVU4Hr1G008700.7 , HORVU4Hr1G008700.6 , HORVU7Hr1G081730.1 , HORVU2Hr1G078580.18 , HORVU2Hr1G078580.10 , HORVU4Hr1G064790.8 , HORVU2Hr1G078580.12 , HORVU2Hr1G078580.13 , HORVU2Hr1G078580.14 , HORVU2Hr1G078580.15 , HORVU2Hr1G078580.16 , HORVU4Hr1G064790.9 , HORVU4Hr1G064790.7 , HORVU3Hr1G112860.2 , HORVU3Hr1G112860.1
Wheat TraesCS4A02G075600 , TraesCS3B02G022900 , TraesCS3B02G022900 , TraesCS4B02G231400 , TraesCS3B02G583600 , TraesCS2D02G313500 , TraesCS2B02G334000 , TraesCS2A02G315800 , TraesCS4A02G262600 , TraesCS4A02G262600 , TraesCS2D02G313800 , TraesCS4B02G052300 , TraesCS2B02G333700 , TraesCS2B02G333700 , TraesCS3D02G523200 , TraesCS3D02G023900 , TraesCS3D02G023900 , TraesCS4D02G052500 , TraesCS4D02G052500 , TraesCS3A02G022600 , TraesCS3A02G022600 , TraesCS3A02G022600 , TraesCS2A02G315300 , TraesCS3A02G515300 , TraesCS3A02G515300 , TraesCS4D02G232700 , TraesCS4D02G232700 , TraesCS4A02G369200
Populus -


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cDNA sequences
Sobic.001G443800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
2 Sobic.001G201200 - -
3 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
5 Sobic.001G371800 expressed protein -
6 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.007G214600 EF hand family protein, putative, expressed -
9 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
10 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
12 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
13 Sobic.007G147700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
14 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
15 Sobic.004G166200 expressed protein -
16 Sobic.003G355100 expressed protein -
17 Sobic.002G291900 RING-H2 finger protein, putative, expressed -
18 Sobic.002G282300 expressed protein -
19 Sobic.001G105900 "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase
20 Sobic.004G109600 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic001G443800 Sobic001G443800 Sobic003G197200 Sobic003G197200 Sobic001G443800--Sobic003G197200 Sobic001G201200 Sobic001G201200 Sobic001G443800--Sobic001G201200 Sobic001G076100 Sobic001G076100 Sobic001G443800--Sobic001G076100 Sobic003G148600 Sobic003G148600 Sobic001G443800--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic001G443800--Sobic001G371800 Sobic010G198500 Sobic010G198500 Sobic001G443800--Sobic010G198500 Sobic003G123600 Sobic003G123600 Sobic001G443800--Sobic003G123600 Sobic007G214600 Sobic007G214600 Sobic001G443800--Sobic007G214600 Sobic006G190100 Sobic006G190100 Sobic001G443800--Sobic006G190100 Sobic003G197200--Sobic003G148600 Sobic003G197200--Sobic007G214600 Sobic003G355100 Sobic003G355100 Sobic003G197200--Sobic003G355100 Sobic003G144700 Sobic003G144700 Sobic003G197200--Sobic003G144700 Sobic003G197200--Sobic001G443800 Sobic001G481300 Sobic001G481300 Sobic003G197200--Sobic001G481300 Sobic003G197200--Sobic001G201200 Sobic004G109600 Sobic004G109600 Sobic003G197200--Sobic004G109600 Sobic003G197200--Sobic003G123600 Sobic001G201200--Sobic001G443800 Sobic001G201200--Sobic001G371800 Sobic001G201200--Sobic003G197200 Sobic001G201200--Sobic010G198500 Sobic001G201200--Sobic001G076100 Sobic001G201200--Sobic007G214600 Sobic001G107800 Sobic001G107800 Sobic001G201200--Sobic001G107800 Sobic001G201200--Sobic003G148600 Sobic007G147700 Sobic007G147700 Sobic001G201200--Sobic007G147700 Sobic001G076100--Sobic001G201200 Sobic001G076100--Sobic001G443800 Sobic001G076100--Sobic003G123600 Sobic001G076100--Sobic001G371800 Sobic001G076100--Sobic001G107800 Sobic002G389000 Sobic002G389000 Sobic001G076100--Sobic002G389000 Sobic001G076100--Sobic003G148600 Sobic001G076100--Sobic003G197200 Sobic006G230600 Sobic006G230600 Sobic001G076100--Sobic006G230600 Sobic003G148600--Sobic003G197200 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic003G148600--Sobic007G214600 Sobic004G166200 Sobic004G166200 Sobic003G148600--Sobic004G166200 Sobic003G148600--Sobic001G107800 Sobic001G405500 Sobic001G405500 Sobic003G148600--Sobic001G405500 Sobic003G394400 Sobic003G394400 Sobic003G148600--Sobic003G394400 Sobic007G214400 Sobic007G214400 Sobic001G371800--Sobic007G214400 Sobic001G371800--Sobic003G394400 Sobic001G371800--Sobic001G201200 Sobic001G371800--Sobic002G389000 Sobic001G371800--Sobic004G166200 Sobic001G371800--Sobic001G107800 Sobic001G371800--Sobic007G214600 Sobic001G371800--Sobic003G197200 Sobic001G371800--Sobic003G148600 Sobic010G198500--Sobic007G214600 Sobic010G198500--Sobic001G201200 Sobic010G198500--Sobic003G197200 Sobic010G198500--Sobic007G147700 Sobic010G198500--Sobic001G443800 Sobic010G198500--Sobic004G109600 Sobic010G198500--Sobic001G371800 Sobic010G198500--Sobic003G355100 Sobic010G198500--Sobic001G481300 Sobic003G123600--Sobic003G148600 Sobic003G123600--Sobic001G107800 Sobic002G415600 Sobic002G415600 Sobic003G123600--Sobic002G415600 Sobic003G123600--Sobic003G197200 Sobic003G123600--Sobic003G144700 Sobic003G123600--Sobic001G076100 Sobic006G230800 Sobic006G230800 Sobic003G123600--Sobic006G230800 Sobic006G190500 Sobic006G190500 Sobic003G123600--Sobic006G190500 Sobic003G123600--Sobic001G443800 Sobic007G214600--Sobic003G355100 Sobic007G214600--Sobic003G197200 Sobic007G214600--Sobic004G109600 Sobic007G214600--Sobic003G148600 Sobic007G214600--Sobic001G481300 Sobic007G214600--Sobic010G198500 Sobic007G214600--Sobic001G371800 Sobic007G214600--Sobic003G394400 Sobic007G214600--Sobic004G166200 Sobic006G190100--Sobic001G443800 Sobic001G138600 Sobic001G138600 Sobic006G190100--Sobic001G138600 Sobic006G190100--Sobic006G190500 Sobic007G213800 Sobic007G213800 Sobic006G190100--Sobic007G213800 Sobic002G261200 Sobic002G261200 Sobic006G190100--Sobic002G261200 Sobic006G190100--Sobic003G148600 Sobic006G190100--Sobic001G371800 Sobic001G391500 Sobic001G391500 Sobic006G190100--Sobic001G391500 Sobic010G198600 Sobic010G198600 Sobic006G190100--Sobic010G198600
Octagon: transcription factors


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