Gene annotation
Transcriptome id Sobic.006G190100.1
Synonym Sb06g026350
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Up-reguralion under heat (PubMedID : 24916767)
naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed
UniProt C5YEI3
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF196
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT4G10500 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os04g49210.1 : naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a022228 , Zm00025a010078 , Zm00025a003152 , Zm00025a000304 , Zm00025a022231
Brachypodium KQK01739 , KQJ84189
Barley HORVU2Hr1G093950.1 , HORVU2Hr1G093950.4 , HORVU2Hr1G093950.5 , HORVU6Hr1G080360.6 , HORVU6Hr1G080360.1 , HORVU6Hr1G080360.3 , HORVU6Hr1G080360.2 , HORVU2Hr1G093950.12 , HORVU2Hr1G093950.13 , HORVU2Hr1G093950.15
Wheat TraesCS2A02G394900 , TraesCS4D02G339800 , TraesCS6A02G331400 , TraesCS4D02G339900 , TraesCS2B02G412900 , TraesCS4B02G344800 , TraesCS2D02G392900 , TraesCS6D02G310700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
2 Sobic.001G138600 VQ domain containing protein, putative, expressed -
3 Sobic.006G190500 expressed protein -
4 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
5 Sobic.002G261200 expressed protein -
6 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
7 Sobic.001G371800 expressed protein -
8 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.004G166200 expressed protein -
12 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
14 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
15 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
16 Sobic.003G394400 ubiquitin family protein, putative, expressed -
17 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
18 Sobic.009G148100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.010G225251 - -


Gene co-expression network
sample Sobic006G190100 Sobic006G190100 Sobic001G443800 Sobic001G443800 Sobic006G190100--Sobic001G443800 Sobic001G138600 Sobic001G138600 Sobic006G190100--Sobic001G138600 Sobic006G190500 Sobic006G190500 Sobic006G190100--Sobic006G190500 Sobic007G213800 Sobic007G213800 Sobic006G190100--Sobic007G213800 Sobic002G261200 Sobic002G261200 Sobic006G190100--Sobic002G261200 Sobic003G148600 Sobic003G148600 Sobic006G190100--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic006G190100--Sobic001G371800 Sobic001G391500 Sobic001G391500 Sobic006G190100--Sobic001G391500 Sobic010G198600 Sobic010G198600 Sobic006G190100--Sobic010G198600 Sobic003G197200 Sobic003G197200 Sobic001G443800--Sobic003G197200 Sobic001G201200 Sobic001G201200 Sobic001G443800--Sobic001G201200 Sobic001G076100 Sobic001G076100 Sobic001G443800--Sobic001G076100 Sobic001G443800--Sobic003G148600 Sobic001G443800--Sobic001G371800 Sobic010G198500 Sobic010G198500 Sobic001G443800--Sobic010G198500 Sobic003G123600 Sobic003G123600 Sobic001G443800--Sobic003G123600 Sobic007G214600 Sobic007G214600 Sobic001G443800--Sobic007G214600 Sobic001G443800--Sobic006G190100 Sobic003G382800 Sobic003G382800 Sobic001G138600--Sobic003G382800 Sobic001G112200 Sobic001G112200 Sobic001G138600--Sobic001G112200 Sobic004G141200 Sobic004G141200 Sobic001G138600--Sobic004G141200 Sobic003G369100 Sobic003G369100 Sobic001G138600--Sobic003G369100 Sobic009G184000 Sobic009G184000 Sobic001G138600--Sobic009G184000 Sobic001G079300 Sobic001G079300 Sobic001G138600--Sobic001G079300 Sobic007G074000 Sobic007G074000 Sobic001G138600--Sobic007G074000 Sobic001G459800 Sobic001G459800 Sobic001G138600--Sobic001G459800 Sobic001G138600--Sobic001G391500 Sobic006G230800 Sobic006G230800 Sobic006G190500--Sobic006G230800 Sobic006G190500--Sobic003G123600 Sobic006G190500--Sobic006G190100 Sobic002G415600 Sobic002G415600 Sobic006G190500--Sobic002G415600 Sobic006G230900 Sobic006G230900 Sobic006G190500--Sobic006G230900 Sobic009G111200 Sobic009G111200 Sobic006G190500--Sobic009G111200 Sobic010G217800 Sobic010G217800 Sobic006G190500--Sobic010G217800 Sobic003G144700 Sobic003G144700 Sobic006G190500--Sobic003G144700 Sobic010G220200 Sobic010G220200 Sobic006G190500--Sobic010G220200 Sobic007G213800--Sobic003G144700 Sobic007G213800--Sobic001G391500 Sobic002G282300 Sobic002G282300 Sobic007G213800--Sobic002G282300 Sobic007G213800--Sobic006G230900 Sobic007G213800--Sobic003G197200 Sobic007G213800--Sobic001G138600 Sobic006G231200 Sobic006G231200 Sobic007G213800--Sobic006G231200 Sobic010G209200 Sobic010G209200 Sobic007G213800--Sobic010G209200 Sobic007G213800--Sobic001G459800 Sobic001G107800 Sobic001G107800 Sobic002G261200--Sobic001G107800 Sobic002G068600 Sobic002G068600 Sobic002G261200--Sobic002G068600 Sobic001G254100 Sobic001G254100 Sobic002G261200--Sobic001G254100 Sobic010G032100 Sobic010G032100 Sobic002G261200--Sobic010G032100 Sobic003G394400 Sobic003G394400 Sobic002G261200--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic002G261200--Sobic004G166200 Sobic002G389000 Sobic002G389000 Sobic002G261200--Sobic002G389000 Sobic007G214400 Sobic007G214400 Sobic002G261200--Sobic007G214400 Sobic001G149800 Sobic001G149800 Sobic002G261200--Sobic001G149800 Sobic003G148600--Sobic003G197200 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G355100 Sobic003G355100 Sobic003G148600--Sobic003G355100 Sobic003G148600--Sobic007G214600 Sobic003G148600--Sobic004G166200 Sobic003G148600--Sobic001G107800 Sobic001G405500 Sobic001G405500 Sobic003G148600--Sobic001G405500 Sobic003G148600--Sobic003G394400 Sobic001G371800--Sobic007G214400 Sobic001G371800--Sobic003G394400 Sobic001G371800--Sobic001G201200 Sobic001G371800--Sobic002G389000 Sobic001G371800--Sobic004G166200 Sobic001G371800--Sobic001G107800 Sobic001G371800--Sobic007G214600 Sobic001G371800--Sobic003G197200 Sobic001G371800--Sobic003G148600 Sobic001G391500--Sobic001G459800 Sobic001G391500--Sobic004G141200 Sobic001G391500--Sobic003G144700 Sobic001G391500--Sobic007G213800 Sobic001G320900 Sobic001G320900 Sobic001G391500--Sobic001G320900 Sobic001G391500--Sobic003G148600 Sobic001G391500--Sobic003G369100 Sobic001G391500--Sobic001G138600 Sobic001G391500--Sobic007G074000 Sobic001G280800 Sobic001G280800 Sobic010G198600--Sobic001G280800 Sobic010G198600--Sobic001G138600 Sobic010G198600--Sobic003G382800 Sobic001G169500 Sobic001G169500 Sobic010G198600--Sobic001G169500 Sobic004G336500 Sobic004G336500 Sobic010G198600--Sobic004G336500 Sobic010G198600--Sobic006G190100 Sobic010G198600--Sobic002G261200 Sobic003G432700 Sobic003G432700 Sobic010G198600--Sobic003G432700 Sobic010G198600--Sobic009G184000
Octagon: transcription factors


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