Gene annotation
Transcriptome id Sobic.006G230800.1
Synonym Sb06g029860
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
wound induced protein, putative, expressed
UniProt C5YGQ2
Pfam PF12609
Panther DB PTHR33090
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G10270 : Wound-responsive family protein
RAP-DB (Rice) LOC_Os04g54240.1 : wound induced protein, putative, expressed
MaizeGDB (Corn) Zm00025a018162 , Zm00025a009631 , Zm00025a009630
Brachypodium KQK17212 , KQJ84834 , KQJ84833 , KQJ93436 , KQJ84831 , KQJ84830 , KQJ84832
Barley HORVU2Hr1G108780.1 , HORVU7Hr1G101580.2 , HORVU2Hr1G116830.1 , HORVU2Hr1G108730.1 , HORVU6Hr1G025830.1 , HORVU2Hr1G116800.1 , HORVU2Hr1G116800.2 , HORVU2Hr1G116800.3 , HORVU2Hr1G116800.4 , HORVU2Hr1G116780.1 , HORVU7Hr1G101580.1
Wheat TraesCS7B02G348300 , TraesCS7A02G449200 , TraesCS2D02G533400 , TraesCS7B02G348900 , TraesCS2D02G532000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G190500 expressed protein -
2 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.010G031100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
4 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.002G261200 expressed protein -
6 Sobic.002G415600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.006G230600 expressed protein -
8 Sobic.009G111200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
10 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
11 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
12 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
13 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
14 Sobic.010G220200 haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed -
15 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
17 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
18 Sobic.006G230700 wound induced protein, putative, expressed -
19 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
20 Sobic.004G088300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBK4 - F-box domain and kelch repeat containing protein, expressed -


Gene co-expression network
sample Sobic006G230800 Sobic006G230800 Sobic006G190500 Sobic006G190500 Sobic006G230800--Sobic006G190500 Sobic003G123600 Sobic003G123600 Sobic006G230800--Sobic003G123600 Sobic010G031100 Sobic010G031100 Sobic006G230800--Sobic010G031100 Sobic001G107800 Sobic001G107800 Sobic006G230800--Sobic001G107800 Sobic002G261200 Sobic002G261200 Sobic006G230800--Sobic002G261200 Sobic002G415600 Sobic002G415600 Sobic006G230800--Sobic002G415600 Sobic006G230600 Sobic006G230600 Sobic006G230800--Sobic006G230600 Sobic009G111200 Sobic009G111200 Sobic006G230800--Sobic009G111200 Sobic010G032100 Sobic010G032100 Sobic006G230800--Sobic010G032100 Sobic006G190500--Sobic006G230800 Sobic006G190500--Sobic003G123600 Sobic006G190100 Sobic006G190100 Sobic006G190500--Sobic006G190100 Sobic006G190500--Sobic002G415600 Sobic006G230900 Sobic006G230900 Sobic006G190500--Sobic006G230900 Sobic006G190500--Sobic009G111200 Sobic010G217800 Sobic010G217800 Sobic006G190500--Sobic010G217800 Sobic003G144700 Sobic003G144700 Sobic006G190500--Sobic003G144700 Sobic010G220200 Sobic010G220200 Sobic006G190500--Sobic010G220200 Sobic003G148600 Sobic003G148600 Sobic003G123600--Sobic003G148600 Sobic003G123600--Sobic001G107800 Sobic003G123600--Sobic002G415600 Sobic003G197200 Sobic003G197200 Sobic003G123600--Sobic003G197200 Sobic003G123600--Sobic003G144700 Sobic001G076100 Sobic001G076100 Sobic003G123600--Sobic001G076100 Sobic003G123600--Sobic006G230800 Sobic003G123600--Sobic006G190500 Sobic001G443800 Sobic001G443800 Sobic003G123600--Sobic001G443800 Sobic010G031100--Sobic010G032100 Sobic010G031100--Sobic006G230800 Sobic001G149800 Sobic001G149800 Sobic010G031100--Sobic001G149800 Sobic002G215300 Sobic002G215300 Sobic010G031100--Sobic002G215300 Sobic006G032700 Sobic006G032700 Sobic010G031100--Sobic006G032700 Sobic010G031100--Sobic006G230600 Sobic010G031100--Sobic002G261200 Sobic003G138300 Sobic003G138300 Sobic010G031100--Sobic003G138300 Sobic001G254100 Sobic001G254100 Sobic010G031100--Sobic001G254100 Sobic001G107800--Sobic003G123600 Sobic003G394400 Sobic003G394400 Sobic001G107800--Sobic003G394400 Sobic007G214400 Sobic007G214400 Sobic001G107800--Sobic007G214400 Sobic001G107800--Sobic003G148600 Sobic001G107800--Sobic002G261200 Sobic001G371800 Sobic001G371800 Sobic001G107800--Sobic001G371800 Sobic001G107800--Sobic001G254100 Sobic001G107800--Sobic003G197200 Sobic002G068600 Sobic002G068600 Sobic001G107800--Sobic002G068600 Sobic002G261200--Sobic001G107800 Sobic002G261200--Sobic002G068600 Sobic002G261200--Sobic001G254100 Sobic002G261200--Sobic010G032100 Sobic002G261200--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic002G261200--Sobic004G166200 Sobic002G389000 Sobic002G389000 Sobic002G261200--Sobic002G389000 Sobic002G261200--Sobic007G214400 Sobic002G261200--Sobic001G149800 Sobic002G415600--Sobic010G217800 Sobic002G415600--Sobic003G123600 Sobic002G415600--Sobic006G230900 Sobic002G415600--Sobic003G144700 Sobic010G234700 Sobic010G234700 Sobic002G415600--Sobic010G234700 Sobic002G415600--Sobic006G190500 Sobic006G231100 Sobic006G231100 Sobic002G415600--Sobic006G231100 Sobic008G177800 Sobic008G177800 Sobic002G415600--Sobic008G177800 Sobic010G234600 Sobic010G234600 Sobic002G415600--Sobic010G234600 Sobic006G230600--Sobic002G389000 Sobic006G230600--Sobic001G371800 Sobic006G230600--Sobic001G107800 Sobic006G230600--Sobic001G076100 Sobic006G230600--Sobic007G214400 Sobic006G230600--Sobic003G394400 Sobic004G088300 Sobic004G088300 Sobic006G230600--Sobic004G088300 Sobic006G230600--Sobic006G230800 Sobic006G230600--Sobic010G031100 Sobic009G111200--Sobic006G190500 Sobic009G111200--Sobic002G415600 Sobic009G111200--Sobic006G230800 Sobic001G481600 Sobic001G481600 Sobic009G111200--Sobic001G481600 Sobic009G111200--Sobic003G123600 Sobic005G010200 Sobic005G010200 Sobic009G111200--Sobic005G010200 Sobic006G231200 Sobic006G231200 Sobic009G111200--Sobic006G231200 Sobic005G103500 Sobic005G103500 Sobic009G111200--Sobic005G103500 Sobic009G111200--Sobic010G217800 Sobic001G397200 Sobic001G397200 Sobic010G032100--Sobic001G397200 Sobic010G032100--Sobic002G068600 Sobic010G032100--Sobic010G031100 Sobic010G032100--Sobic002G261200 Sobic010G032100--Sobic001G149800 Sobic001G309600 Sobic001G309600 Sobic010G032100--Sobic001G309600 Sobic010G032100--Sobic006G032700 Sobic010G032100--Sobic003G394400 Sobic001G481500 Sobic001G481500 Sobic010G032100--Sobic001G481500
Octagon: transcription factors


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