Gene annotation
Transcriptome id Sobic.004G088300.1
Synonym Sb04g007310
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
OsFBK4 - F-box domain and kelch repeat containing protein, expressed
UniProt C5XXZ5
Pfam PF00646 PF01344
Panther DB PTHR24413 PTHR24413:SF93
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G80440 : Galactose oxidase/kelch repeat superfamily protein
RAP-DB (Rice) LOC_Os02g11790.1 : OsFBK4 - F-box domain and kelch repeat containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS6D02G165600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
2 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G230600 expressed protein -
4 Sobic.007G214400 EF hand family protein, putative, expressed -
5 Sobic.001G371800 expressed protein -
6 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
8 Sobic.010G031100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
9 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
10 Sobic.001G201200 - -
11 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
12 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G018300 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.002G261200 expressed protein -
15 Sobic.004G340200 dehydrogenase, putative, expressed K09753: cinnamoyl-CoA reductase
16 Sobic.009G148100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.009G123400 - -
18 Sobic.003G394400 ubiquitin family protein, putative, expressed -
19 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
20 Sobic.006G190500 expressed protein -


Gene co-expression network
sample Sobic004G088300 Sobic004G088300 Sobic002G389000 Sobic002G389000 Sobic004G088300--Sobic002G389000 Sobic001G076100 Sobic001G076100 Sobic004G088300--Sobic001G076100 Sobic006G230600 Sobic006G230600 Sobic004G088300--Sobic006G230600 Sobic007G214400 Sobic007G214400 Sobic004G088300--Sobic007G214400 Sobic001G371800 Sobic001G371800 Sobic004G088300--Sobic001G371800 Sobic001G107800 Sobic001G107800 Sobic004G088300--Sobic001G107800 Sobic006G230800 Sobic006G230800 Sobic004G088300--Sobic006G230800 Sobic010G031100 Sobic010G031100 Sobic004G088300--Sobic010G031100 Sobic001G443800 Sobic001G443800 Sobic004G088300--Sobic001G443800 Sobic002G389000--Sobic007G214400 Sobic002G389000--Sobic001G371800 Sobic002G389000--Sobic001G107800 Sobic003G394400 Sobic003G394400 Sobic002G389000--Sobic003G394400 Sobic002G389000--Sobic001G076100 Sobic002G389000--Sobic006G230600 Sobic002G389000--Sobic004G088300 Sobic002G261200 Sobic002G261200 Sobic002G389000--Sobic002G261200 Sobic001G254100 Sobic001G254100 Sobic002G389000--Sobic001G254100 Sobic001G201200 Sobic001G201200 Sobic001G076100--Sobic001G201200 Sobic001G076100--Sobic001G443800 Sobic003G123600 Sobic003G123600 Sobic001G076100--Sobic003G123600 Sobic001G076100--Sobic001G371800 Sobic001G076100--Sobic001G107800 Sobic001G076100--Sobic002G389000 Sobic003G148600 Sobic003G148600 Sobic001G076100--Sobic003G148600 Sobic003G197200 Sobic003G197200 Sobic001G076100--Sobic003G197200 Sobic001G076100--Sobic006G230600 Sobic006G230600--Sobic002G389000 Sobic006G230600--Sobic001G371800 Sobic006G230600--Sobic001G107800 Sobic006G230600--Sobic001G076100 Sobic006G230600--Sobic007G214400 Sobic006G230600--Sobic003G394400 Sobic006G230600--Sobic004G088300 Sobic006G230600--Sobic006G230800 Sobic006G230600--Sobic010G031100 Sobic007G214400--Sobic003G394400 Sobic007G214400--Sobic001G371800 Sobic007G214400--Sobic002G389000 Sobic007G214400--Sobic001G107800 Sobic002G068600 Sobic002G068600 Sobic007G214400--Sobic002G068600 Sobic007G214400--Sobic001G254100 Sobic007G214400--Sobic002G261200 Sobic003G086600 Sobic003G086600 Sobic007G214400--Sobic003G086600 Sobic007G214600 Sobic007G214600 Sobic007G214400--Sobic007G214600 Sobic001G371800--Sobic007G214400 Sobic001G371800--Sobic003G394400 Sobic001G371800--Sobic001G201200 Sobic001G371800--Sobic002G389000 Sobic004G166200 Sobic004G166200 Sobic001G371800--Sobic004G166200 Sobic001G371800--Sobic001G107800 Sobic001G371800--Sobic007G214600 Sobic001G371800--Sobic003G197200 Sobic001G371800--Sobic003G148600 Sobic001G107800--Sobic003G123600 Sobic001G107800--Sobic003G394400 Sobic001G107800--Sobic007G214400 Sobic001G107800--Sobic003G148600 Sobic001G107800--Sobic002G261200 Sobic001G107800--Sobic001G371800 Sobic001G107800--Sobic001G254100 Sobic001G107800--Sobic003G197200 Sobic001G107800--Sobic002G068600 Sobic006G190500 Sobic006G190500 Sobic006G230800--Sobic006G190500 Sobic006G230800--Sobic003G123600 Sobic006G230800--Sobic010G031100 Sobic006G230800--Sobic001G107800 Sobic006G230800--Sobic002G261200 Sobic002G415600 Sobic002G415600 Sobic006G230800--Sobic002G415600 Sobic006G230800--Sobic006G230600 Sobic009G111200 Sobic009G111200 Sobic006G230800--Sobic009G111200 Sobic010G032100 Sobic010G032100 Sobic006G230800--Sobic010G032100 Sobic010G031100--Sobic010G032100 Sobic010G031100--Sobic006G230800 Sobic001G149800 Sobic001G149800 Sobic010G031100--Sobic001G149800 Sobic002G215300 Sobic002G215300 Sobic010G031100--Sobic002G215300 Sobic006G032700 Sobic006G032700 Sobic010G031100--Sobic006G032700 Sobic010G031100--Sobic006G230600 Sobic010G031100--Sobic002G261200 Sobic003G138300 Sobic003G138300 Sobic010G031100--Sobic003G138300 Sobic010G031100--Sobic001G254100 Sobic001G443800--Sobic003G197200 Sobic001G443800--Sobic001G201200 Sobic001G443800--Sobic001G076100 Sobic001G443800--Sobic003G148600 Sobic001G443800--Sobic001G371800 Sobic010G198500 Sobic010G198500 Sobic001G443800--Sobic010G198500 Sobic001G443800--Sobic003G123600 Sobic001G443800--Sobic007G214600 Sobic006G190100 Sobic006G190100 Sobic001G443800--Sobic006G190100
Octagon: transcription factors


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