Gene annotation
Transcriptome id Sobic.004G340200.1
Synonym CCR1, IRX4, Sb04g036770, ATCCR1
Functional annotation dehydrogenase, putative, expressed
UniProt C5XV87
Pfam PF01370
Panther DB PTHR10366 PTHR10366:SF353
NCBI CDD KOG1502; Flavonol reductase/cinnamoyl-CoA reductase
KEGG Orthology K09753; cinnamoyl-CoA reductase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT1G15950 : cinnamoyl coa reductase 1
RAP-DB (Rice) LOC_Os02g56460.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a032824
Brachypodium PNT69420 , PNT69417 , PNT69418 , PNT69419 , KQK01292 , KQK01290
Barley HORVU6Hr1G089350.7 , HORVU6Hr1G089350.6 , HORVU6Hr1G089350.5 , HORVU6Hr1G089350.4 , HORVU6Hr1G089350.3 , HORVU6Hr1G089350.2 , HORVU6Hr1G089350.1 , HORVU6Hr1G089350.9 , HORVU6Hr1G089350.8 , HORVU6Hr1G089310.3 , HORVU6Hr1G089310.2 , HORVU6Hr1G089310.1 , HORVU6Hr1G089460.1 , HORVU6Hr1G089460.3 , HORVU6Hr1G089460.2 , HORVU6Hr1G089460.5 , HORVU6Hr1G089460.4 , HORVU6Hr1G089460.7 , HORVU6Hr1G089460.6 , HORVU6Hr1G089460.8 , HORVU6Hr1G089350.12 , HORVU6Hr1G089350.11 , HORVU6Hr1G089350.10 , HORVU6Hr1G089340.1 , HORVU6Hr1G089340.3 , HORVU6Hr1G089340.6 , HORVU6Hr1G089340.8 , HORVU6Hr1G089340.9 , HORVU6Hr1G089340.2 , HORVU6Hr1G089340.4 , HORVU6Hr1G089340.5 , HORVU6Hr1G089340.7
Wheat TraesCS6A02G381400 , TraesCS6A02G380900 , TraesCS6D02G365900 , TraesCS6B02G420500 , TraesCS6B02G420900 , TraesCS6B02G420200 , TraesCS6A02G147300 , TraesCS6D02G366200 , TraesCS6D02G136600 , TraesCS6D02G136600 , TraesCS6D02G366000 , TraesCS6D02G369500 , TraesCS6B02G420000 , TraesCS6A02G380700 , TraesCS6A02G380700 , TraesCS6A02G381700 , TraesCS6D02G136600 , TraesCS6B02G420300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G123400 - -
2 Sobic.010G032000 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
3 Sobic.004G210700 ATOZI1, putative, expressed -
4 Sobic.007G066900 Cupin domain containing protein, expressed -
5 Sobic.010G031100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
6 Sobic.004G140850 - -
7 Sobic.004G140850 - -
8 Sobic.004G140850 - -
9 Sobic.005G215601 - -
10 Sobic.010G031900 early nodulin 93 ENOD93 protein, putative, expressed -
11 Sobic.004G088300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBK4 - F-box domain and kelch repeat containing protein, expressed -
12 Sobic.008G149900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.008G036200 expressed protein -
14 Sobic.002G090600 OsFBX397 - F-box domain containing protein, expressed -
15 Sobic.003G018300 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.006G230600 expressed protein -
17 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
18 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
19 Sobic.001G129700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
20 Sobic.001G436800 expressed protein -


Gene co-expression network
sample Sobic004G340200 Sobic004G340200 Sobic009G123400 Sobic009G123400 Sobic004G340200--Sobic009G123400 Sobic010G032000 Sobic010G032000 Sobic004G340200--Sobic010G032000 Sobic004G210700 Sobic004G210700 Sobic004G340200--Sobic004G210700 Sobic007G066900 Sobic007G066900 Sobic004G340200--Sobic007G066900 Sobic010G031100 Sobic010G031100 Sobic004G340200--Sobic010G031100 Sobic004G140850 Sobic004G140850 Sobic004G340200--Sobic004G140850 Sobic005G215601 Sobic005G215601 Sobic004G340200--Sobic005G215601 Sobic009G123400--Sobic004G340200 Sobic009G123400--Sobic010G032000 Sobic009G123400--Sobic010G031100 Sobic009G123400--Sobic005G215601 Sobic010G031900 Sobic010G031900 Sobic009G123400--Sobic010G031900 Sobic009G123400--Sobic004G210700 Sobic009G123400--Sobic007G066900 Sobic004G088300 Sobic004G088300 Sobic009G123400--Sobic004G088300 Sobic006G230600 Sobic006G230600 Sobic009G123400--Sobic006G230600 Sobic010G032000--Sobic005G215601 Sobic010G032000--Sobic004G340200 Sobic010G032000--Sobic009G123400 Sobic010G032000--Sobic007G066900 Sobic001G129700 Sobic001G129700 Sobic010G032000--Sobic001G129700 Sobic010G032000--Sobic004G210700 Sobic010G032000--Sobic004G140850 Sobic004G210700--Sobic004G340200 Sobic004G210700--Sobic007G066900 Sobic004G210700--Sobic009G123400 Sobic007G067608 Sobic007G067608 Sobic004G210700--Sobic007G067608 Sobic004G210700--Sobic010G031100 Sobic004G210700--Sobic010G032000 Sobic004G210700--Sobic005G215601 Sobic004G210700--Sobic004G140850 Sobic007G066900--Sobic007G067608 Sobic007G066900--Sobic010G032000 Sobic007G066900--Sobic004G210700 Sobic007G066900--Sobic004G340200 Sobic007G066900--Sobic004G140850 Sobic007G066900--Sobic009G123400 Sobic007G066500 Sobic007G066500 Sobic007G066900--Sobic007G066500 Sobic010G032100 Sobic010G032100 Sobic010G031100--Sobic010G032100 Sobic006G230800 Sobic006G230800 Sobic010G031100--Sobic006G230800 Sobic001G149800 Sobic001G149800 Sobic010G031100--Sobic001G149800 Sobic002G215300 Sobic002G215300 Sobic010G031100--Sobic002G215300 Sobic006G032700 Sobic006G032700 Sobic010G031100--Sobic006G032700 Sobic010G031100--Sobic006G230600 Sobic002G261200 Sobic002G261200 Sobic010G031100--Sobic002G261200 Sobic003G138300 Sobic003G138300 Sobic010G031100--Sobic003G138300 Sobic001G254100 Sobic001G254100 Sobic010G031100--Sobic001G254100 Sobic004G140850--Sobic004G140850 Sobic004G140850--Sobic007G066900 Sobic002G379201 Sobic002G379201 Sobic004G140850--Sobic002G379201 Sobic004G140850--Sobic004G340200 Sobic002G315900 Sobic002G315900 Sobic004G140850--Sobic002G315900 Sobic004G140850--Sobic007G067608 Sobic004G140850--Sobic004G210700 Sobic008G149900 Sobic008G149900 Sobic004G140850--Sobic008G149900 Sobic005G215601--Sobic010G032000 Sobic005G215601--Sobic004G340200 Sobic005G215601--Sobic009G123400 Sobic005G215601--Sobic010G031100 Sobic005G215601--Sobic001G129700 Sobic005G215601--Sobic004G210700 Sobic001G354200 Sobic001G354200 Sobic005G215601--Sobic001G354200 Sobic005G215601--Sobic007G066900 Sobic005G215601--Sobic006G032700
Octagon: transcription factors


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