Gene annotation
Transcriptome id Sobic.008G036200.1
Synonym Sb08g003130
Functional annotation expressed protein
UniProt A0A1B6PB46
Pfam PF08711
Panther DB PTHR15141 PTHR15141:SF45
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G10820 : Transcription elongation factor (TFIIS) family protein
RAP-DB (Rice) LOC_Os10g10270.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G018300 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.010G031900 early nodulin 93 ENOD93 protein, putative, expressed -
3 Sobic.004G340200 dehydrogenase, putative, expressed K09753: cinnamoyl-CoA reductase
4 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
5 Sobic.002G215300 expressed protein -
6 Sobic.004G088300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBK4 - F-box domain and kelch repeat containing protein, expressed -
7 Sobic.007G214400 EF hand family protein, putative, expressed -
8 Sobic.010G031100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
9 Sobic.006G230600 expressed protein -
10 Sobic.004G210700 ATOZI1, putative, expressed -
11 Sobic.009G123400 - -
12 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
14 Sobic.010G031300 auxin-induced protein 5NG4, putative, expressed -
15 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
16 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
17 Sobic.003G138300 expressed protein -
18 Sobic.003G394400 ubiquitin family protein, putative, expressed -
19 Sobic.008G149900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G371800 expressed protein -


Gene co-expression network
sample Sobic008G036200 Sobic008G036200 Sobic003G018300 Sobic003G018300 Sobic008G036200--Sobic003G018300 Sobic010G031900 Sobic010G031900 Sobic008G036200--Sobic010G031900 Sobic004G340200 Sobic004G340200 Sobic008G036200--Sobic004G340200 Sobic002G389000 Sobic002G389000 Sobic008G036200--Sobic002G389000 Sobic002G215300 Sobic002G215300 Sobic008G036200--Sobic002G215300 Sobic004G088300 Sobic004G088300 Sobic008G036200--Sobic004G088300 Sobic007G214400 Sobic007G214400 Sobic008G036200--Sobic007G214400 Sobic010G031100 Sobic010G031100 Sobic008G036200--Sobic010G031100 Sobic006G230600 Sobic006G230600 Sobic008G036200--Sobic006G230600 Sobic003G018300--Sobic002G389000 Sobic003G018300--Sobic004G088300 Sobic003G018300--Sobic008G036200 Sobic003G018300--Sobic007G214400 Sobic003G018300--Sobic006G230600 Sobic001G076100 Sobic001G076100 Sobic003G018300--Sobic001G076100 Sobic001G107800 Sobic001G107800 Sobic003G018300--Sobic001G107800 Sobic001G254100 Sobic001G254100 Sobic003G018300--Sobic001G254100 Sobic001G201200 Sobic001G201200 Sobic003G018300--Sobic001G201200 Sobic009G123400 Sobic009G123400 Sobic010G031900--Sobic009G123400 Sobic010G031900--Sobic004G340200 Sobic010G031900--Sobic007G214400 Sobic006G032700 Sobic006G032700 Sobic010G031900--Sobic006G032700 Sobic010G031900--Sobic010G031100 Sobic001G149800 Sobic001G149800 Sobic010G031900--Sobic001G149800 Sobic010G031900--Sobic002G389000 Sobic010G031900--Sobic001G107800 Sobic010G031900--Sobic001G254100 Sobic004G340200--Sobic009G123400 Sobic010G032000 Sobic010G032000 Sobic004G340200--Sobic010G032000 Sobic004G210700 Sobic004G210700 Sobic004G340200--Sobic004G210700 Sobic007G066900 Sobic007G066900 Sobic004G340200--Sobic007G066900 Sobic004G340200--Sobic010G031100 Sobic004G140850 Sobic004G140850 Sobic004G340200--Sobic004G140850 Sobic005G215601 Sobic005G215601 Sobic004G340200--Sobic005G215601 Sobic002G389000--Sobic007G214400 Sobic001G371800 Sobic001G371800 Sobic002G389000--Sobic001G371800 Sobic002G389000--Sobic001G107800 Sobic003G394400 Sobic003G394400 Sobic002G389000--Sobic003G394400 Sobic002G389000--Sobic001G076100 Sobic002G389000--Sobic006G230600 Sobic002G389000--Sobic004G088300 Sobic002G261200 Sobic002G261200 Sobic002G389000--Sobic002G261200 Sobic002G389000--Sobic001G254100 Sobic002G215300--Sobic010G031100 Sobic003G138300 Sobic003G138300 Sobic002G215300--Sobic003G138300 Sobic001G309600 Sobic001G309600 Sobic002G215300--Sobic001G309600 Sobic002G215300--Sobic001G149800 Sobic010G032100 Sobic010G032100 Sobic002G215300--Sobic010G032100 Sobic002G215300--Sobic006G032700 Sobic001G481500 Sobic001G481500 Sobic002G215300--Sobic001G481500 Sobic010G031300 Sobic010G031300 Sobic002G215300--Sobic010G031300 Sobic002G215300--Sobic003G394400 Sobic004G088300--Sobic002G389000 Sobic004G088300--Sobic001G076100 Sobic004G088300--Sobic006G230600 Sobic004G088300--Sobic007G214400 Sobic004G088300--Sobic001G371800 Sobic004G088300--Sobic001G107800 Sobic006G230800 Sobic006G230800 Sobic004G088300--Sobic006G230800 Sobic004G088300--Sobic010G031100 Sobic001G443800 Sobic001G443800 Sobic004G088300--Sobic001G443800 Sobic007G214400--Sobic003G394400 Sobic007G214400--Sobic001G371800 Sobic007G214400--Sobic002G389000 Sobic007G214400--Sobic001G107800 Sobic002G068600 Sobic002G068600 Sobic007G214400--Sobic002G068600 Sobic007G214400--Sobic001G254100 Sobic007G214400--Sobic002G261200 Sobic003G086600 Sobic003G086600 Sobic007G214400--Sobic003G086600 Sobic007G214600 Sobic007G214600 Sobic007G214400--Sobic007G214600 Sobic010G031100--Sobic010G032100 Sobic010G031100--Sobic006G230800 Sobic010G031100--Sobic001G149800 Sobic010G031100--Sobic002G215300 Sobic010G031100--Sobic006G032700 Sobic010G031100--Sobic006G230600 Sobic010G031100--Sobic002G261200 Sobic010G031100--Sobic003G138300 Sobic010G031100--Sobic001G254100 Sobic006G230600--Sobic002G389000 Sobic006G230600--Sobic001G371800 Sobic006G230600--Sobic001G107800 Sobic006G230600--Sobic001G076100 Sobic006G230600--Sobic007G214400 Sobic006G230600--Sobic003G394400 Sobic006G230600--Sobic004G088300 Sobic006G230600--Sobic006G230800 Sobic006G230600--Sobic010G031100
Octagon: transcription factors


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