Gene annotation
Transcriptome id Sobic.003G394400.2,Sobic.003G394400.1
Synonym Sb03g043180
Functional annotation ubiquitin family protein, putative, expressed
UniProt C5XFI0
Pfam PF00240
Panther DB PTHR10666 PTHR10666:SF115
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G14360 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os01g67950.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a039407 , Zm00025a026366
Brachypodium KQK11102
Barley HORVU3Hr1G081400.2 , HORVU3Hr1G081400.1
Wheat TraesCS3B02G422400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
2 Sobic.007G214400 EF hand family protein, putative, expressed -
3 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
4 Sobic.001G371800 expressed protein -
5 Sobic.004G166200 expressed protein -
6 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G355100 expressed protein -
8 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.007G214600 EF hand family protein, putative, expressed -
10 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
12 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
13 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
14 Sobic.002G261200 expressed protein -
15 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
16 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
17 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
18 Sobic.001G108200 expressed protein -
19 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
20 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -


Gene co-expression network
sample Sobic003G394400 Sobic003G394400 Sobic002G068600 Sobic002G068600 Sobic003G394400--Sobic002G068600 Sobic007G214400 Sobic007G214400 Sobic003G394400--Sobic007G214400 Sobic003G086600 Sobic003G086600 Sobic003G394400--Sobic003G086600 Sobic001G371800 Sobic001G371800 Sobic003G394400--Sobic001G371800 Sobic004G166200 Sobic004G166200 Sobic003G394400--Sobic004G166200 Sobic001G107800 Sobic001G107800 Sobic003G394400--Sobic001G107800 Sobic003G355100 Sobic003G355100 Sobic003G394400--Sobic003G355100 Sobic003G148600 Sobic003G148600 Sobic003G394400--Sobic003G148600 Sobic007G214600 Sobic007G214600 Sobic003G394400--Sobic007G214600 Sobic002G068600--Sobic003G394400 Sobic002G068600--Sobic003G086600 Sobic002G068600--Sobic004G166200 Sobic001G254100 Sobic001G254100 Sobic002G068600--Sobic001G254100 Sobic002G068600--Sobic001G107800 Sobic002G261200 Sobic002G261200 Sobic002G068600--Sobic002G261200 Sobic007G026600 Sobic007G026600 Sobic002G068600--Sobic007G026600 Sobic002G068600--Sobic007G214400 Sobic010G032100 Sobic010G032100 Sobic002G068600--Sobic010G032100 Sobic007G214400--Sobic003G394400 Sobic007G214400--Sobic001G371800 Sobic002G389000 Sobic002G389000 Sobic007G214400--Sobic002G389000 Sobic007G214400--Sobic001G107800 Sobic007G214400--Sobic002G068600 Sobic007G214400--Sobic001G254100 Sobic007G214400--Sobic002G261200 Sobic007G214400--Sobic003G086600 Sobic007G214400--Sobic007G214600 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic001G405500 Sobic001G405500 Sobic003G086600--Sobic001G405500 Sobic001G108200 Sobic001G108200 Sobic003G086600--Sobic001G108200 Sobic003G086600--Sobic004G166200 Sobic003G382800 Sobic003G382800 Sobic003G086600--Sobic003G382800 Sobic003G086600--Sobic003G355100 Sobic001G397200 Sobic001G397200 Sobic003G086600--Sobic001G397200 Sobic003G086600--Sobic007G026600 Sobic001G371800--Sobic007G214400 Sobic001G371800--Sobic003G394400 Sobic001G201200 Sobic001G201200 Sobic001G371800--Sobic001G201200 Sobic001G371800--Sobic002G389000 Sobic001G371800--Sobic004G166200 Sobic001G371800--Sobic001G107800 Sobic001G371800--Sobic007G214600 Sobic003G197200 Sobic003G197200 Sobic001G371800--Sobic003G197200 Sobic001G371800--Sobic003G148600 Sobic004G166200--Sobic003G394400 Sobic004G166200--Sobic002G068600 Sobic004G166200--Sobic003G148600 Sobic004G166200--Sobic001G371800 Sobic004G166200--Sobic007G214600 Sobic004G166200--Sobic001G107800 Sobic004G166200--Sobic003G355100 Sobic004G166200--Sobic003G382800 Sobic004G166200--Sobic003G197200 Sobic003G123600 Sobic003G123600 Sobic001G107800--Sobic003G123600 Sobic001G107800--Sobic003G394400 Sobic001G107800--Sobic007G214400 Sobic001G107800--Sobic003G148600 Sobic001G107800--Sobic002G261200 Sobic001G107800--Sobic001G371800 Sobic001G107800--Sobic001G254100 Sobic001G107800--Sobic003G197200 Sobic001G107800--Sobic002G068600 Sobic003G355100--Sobic007G214600 Sobic003G355100--Sobic003G197200 Sobic001G481300 Sobic001G481300 Sobic003G355100--Sobic001G481300 Sobic003G355100--Sobic003G148600 Sobic004G109600 Sobic004G109600 Sobic003G355100--Sobic004G109600 Sobic003G355100--Sobic003G394400 Sobic003G355100--Sobic001G108200 Sobic003G144700 Sobic003G144700 Sobic003G355100--Sobic003G144700 Sobic003G355100--Sobic004G166200 Sobic003G148600--Sobic003G197200 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic003G148600--Sobic007G214600 Sobic003G148600--Sobic004G166200 Sobic003G148600--Sobic001G107800 Sobic003G148600--Sobic001G405500 Sobic003G148600--Sobic003G394400 Sobic007G214600--Sobic003G355100 Sobic007G214600--Sobic003G197200 Sobic007G214600--Sobic004G109600 Sobic007G214600--Sobic003G148600 Sobic007G214600--Sobic001G481300 Sobic010G198500 Sobic010G198500 Sobic007G214600--Sobic010G198500 Sobic007G214600--Sobic001G371800 Sobic007G214600--Sobic003G394400 Sobic007G214600--Sobic004G166200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.