Gene annotation
Transcriptome id Sobic.007G214600.1
Synonym Sb07g028130
Functional annotation EF hand family protein, putative, expressed
UniProt C5YJ55
Pfam PF13499
Panther DB PTHR10891 PTHR10891:SF577
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44310 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os09g31040.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a005031 , Zm00025a005034 , Zm00025a005027 , Zm00025a005041
Brachypodium -
Barley HORVU5Hr1G072700.1 , HORVU5Hr1G072700.3 , HORVU5Hr1G072700.2
Wheat -
Populus -


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cDNA sequences
Sobic.007G214600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G355100 expressed protein -
2 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
3 Sobic.004G109600 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
5 Sobic.001G481300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
6 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G371800 expressed protein -
8 Sobic.003G394400 ubiquitin family protein, putative, expressed -
9 Sobic.004G166200 expressed protein -
10 Sobic.001G108200 expressed protein -
11 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
12 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
13 Sobic.001G201200 - -
14 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
16 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
17 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
18 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
19 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
20 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic007G214600 Sobic007G214600 Sobic003G355100 Sobic003G355100 Sobic007G214600--Sobic003G355100 Sobic003G197200 Sobic003G197200 Sobic007G214600--Sobic003G197200 Sobic004G109600 Sobic004G109600 Sobic007G214600--Sobic004G109600 Sobic003G148600 Sobic003G148600 Sobic007G214600--Sobic003G148600 Sobic001G481300 Sobic001G481300 Sobic007G214600--Sobic001G481300 Sobic010G198500 Sobic010G198500 Sobic007G214600--Sobic010G198500 Sobic001G371800 Sobic001G371800 Sobic007G214600--Sobic001G371800 Sobic003G394400 Sobic003G394400 Sobic007G214600--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic007G214600--Sobic004G166200 Sobic003G355100--Sobic007G214600 Sobic003G355100--Sobic003G197200 Sobic003G355100--Sobic001G481300 Sobic003G355100--Sobic003G148600 Sobic003G355100--Sobic004G109600 Sobic003G355100--Sobic003G394400 Sobic001G108200 Sobic001G108200 Sobic003G355100--Sobic001G108200 Sobic003G144700 Sobic003G144700 Sobic003G355100--Sobic003G144700 Sobic003G355100--Sobic004G166200 Sobic003G197200--Sobic003G148600 Sobic003G197200--Sobic007G214600 Sobic003G197200--Sobic003G355100 Sobic003G197200--Sobic003G144700 Sobic001G443800 Sobic001G443800 Sobic003G197200--Sobic001G443800 Sobic003G197200--Sobic001G481300 Sobic001G201200 Sobic001G201200 Sobic003G197200--Sobic001G201200 Sobic003G197200--Sobic004G109600 Sobic003G123600 Sobic003G123600 Sobic003G197200--Sobic003G123600 Sobic004G109600--Sobic001G481300 Sobic004G109600--Sobic003G355100 Sobic004G109600--Sobic007G214600 Sobic004G109700 Sobic004G109700 Sobic004G109600--Sobic004G109700 Sobic004G109600--Sobic003G197200 Sobic004G109600--Sobic010G198500 Sobic004G109600--Sobic003G148600 Sobic004G109600--Sobic001G371800 Sobic004G109600--Sobic001G201200 Sobic003G148600--Sobic003G197200 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic003G148600--Sobic007G214600 Sobic003G148600--Sobic004G166200 Sobic001G107800 Sobic001G107800 Sobic003G148600--Sobic001G107800 Sobic001G405500 Sobic001G405500 Sobic003G148600--Sobic001G405500 Sobic003G148600--Sobic003G394400 Sobic001G481300--Sobic003G355100 Sobic001G481300--Sobic004G109600 Sobic001G481300--Sobic003G197200 Sobic001G481300--Sobic007G214600 Sobic001G279350 Sobic001G279350 Sobic001G481300--Sobic001G279350 Sobic001G481300--Sobic004G109700 Sobic001G481300--Sobic003G148600 Sobic001G481300--Sobic001G371800 Sobic001G481300--Sobic010G198500 Sobic010G198500--Sobic007G214600 Sobic010G198500--Sobic001G201200 Sobic010G198500--Sobic003G197200 Sobic007G147700 Sobic007G147700 Sobic010G198500--Sobic007G147700 Sobic010G198500--Sobic001G443800 Sobic010G198500--Sobic004G109600 Sobic010G198500--Sobic001G371800 Sobic010G198500--Sobic003G355100 Sobic010G198500--Sobic001G481300 Sobic007G214400 Sobic007G214400 Sobic001G371800--Sobic007G214400 Sobic001G371800--Sobic003G394400 Sobic001G371800--Sobic001G201200 Sobic002G389000 Sobic002G389000 Sobic001G371800--Sobic002G389000 Sobic001G371800--Sobic004G166200 Sobic001G371800--Sobic001G107800 Sobic001G371800--Sobic007G214600 Sobic001G371800--Sobic003G197200 Sobic001G371800--Sobic003G148600 Sobic002G068600 Sobic002G068600 Sobic003G394400--Sobic002G068600 Sobic003G394400--Sobic007G214400 Sobic003G086600 Sobic003G086600 Sobic003G394400--Sobic003G086600 Sobic003G394400--Sobic001G371800 Sobic003G394400--Sobic004G166200 Sobic003G394400--Sobic001G107800 Sobic003G394400--Sobic003G355100 Sobic003G394400--Sobic003G148600 Sobic003G394400--Sobic007G214600 Sobic004G166200--Sobic003G394400 Sobic004G166200--Sobic002G068600 Sobic004G166200--Sobic003G148600 Sobic004G166200--Sobic001G371800 Sobic004G166200--Sobic007G214600 Sobic004G166200--Sobic001G107800 Sobic004G166200--Sobic003G355100 Sobic003G382800 Sobic003G382800 Sobic004G166200--Sobic003G382800 Sobic004G166200--Sobic003G197200
Octagon: transcription factors


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