Gene annotation
Transcriptome id Sobic.009G169000.1
Synonym Sb09g023060
Functional annotation thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed
UniProt C5YZE5
Pfam PF02775 PF00205 PF02776
Panther DB PTHR18968 PTHR18968:SF121
NCBI CDD -
KEGG Orthology K01568; PDC, pyruvate decarboxylase
Gene Ontology GO:0003824; catalytic activity GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT5G01320 : Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
RAP-DB (Rice) LOC_Os05g39310.1 : thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049263 , Zm00025a037766 , Zm00025a002003
Brachypodium PNT77590 , KQK02806 , KQK14495
Barley HORVU3Hr1G018650.3 , HORVU2Hr1G012660.3 , HORVU2Hr1G012660.2 , HORVU2Hr1G014390.4 , HORVU2Hr1G014390.1 , HORVU2Hr1G014390.3 , HORVU2Hr1G014390.2 , HORVU4Hr1G056050.8 , HORVU4Hr1G056050.9 , HORVU4Hr1G056050.2 , HORVU4Hr1G056050.3 , HORVU4Hr1G056050.1 , HORVU4Hr1G056050.6 , HORVU4Hr1G056050.7 , HORVU4Hr1G056050.4 , HORVU4Hr1G056050.5 , HORVU2Hr1G012650.2 , HORVU2Hr1G014360.1 , HORVU2Hr1G012650.1 , HORVU2Hr1G012660.1
Wheat TraesCS2A02G088400 , TraesCS2A02G088600 , TraesCSU02G014800 , TraesCS2B02G103900 , TraesCS4B02G193200 , TraesCS4B02G193200 , TraesCS4D02G194200 , TraesCS4D02G194200 , TraesCS4A02G110900 , TraesCS4A02G110900 , TraesCS2D02G086100 , TraesCS2D02G086300 , TraesCS2D02G086000 , TraesCS2B02G583600 , TraesCS2B02G583600 , TraesCS2B02G104000 , TraesCS2A02G552200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
2 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
3 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
4 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
5 Sobic.003G355100 expressed protein -
6 Sobic.007G214600 EF hand family protein, putative, expressed -
7 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
8 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
10 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
11 Sobic.007G214400 EF hand family protein, putative, expressed -
12 Sobic.002G415600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed K09286: EREBP-like factor
13 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.004G109600 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.001G426000 Up-reguralion under heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
16 Sobic.003G394400 ubiquitin family protein, putative, expressed -
17 Sobic.001G481300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
18 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
19 Sobic.001G371800 expressed protein -
20 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic009G169000 Sobic009G169000 Sobic001G320900 Sobic001G320900 Sobic009G169000--Sobic001G320900 Sobic003G144700 Sobic003G144700 Sobic009G169000--Sobic003G144700 Sobic004G280200 Sobic004G280200 Sobic009G169000--Sobic004G280200 Sobic003G197200 Sobic003G197200 Sobic009G169000--Sobic003G197200 Sobic003G355100 Sobic003G355100 Sobic009G169000--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic009G169000--Sobic007G214600 Sobic003G148600 Sobic003G148600 Sobic009G169000--Sobic003G148600 Sobic001G107800 Sobic001G107800 Sobic009G169000--Sobic001G107800 Sobic007G026600 Sobic007G026600 Sobic009G169000--Sobic007G026600 Sobic009G036000 Sobic009G036000 Sobic001G320900--Sobic009G036000 Sobic001G320900--Sobic003G144700 Sobic001G320900--Sobic009G169000 Sobic001G391500 Sobic001G391500 Sobic001G320900--Sobic001G391500 Sobic001G320900--Sobic003G148600 Sobic009G036100 Sobic009G036100 Sobic001G320900--Sobic009G036100 Sobic001G320900--Sobic003G197200 Sobic001G320900--Sobic003G355100 Sobic001G405500 Sobic001G405500 Sobic001G320900--Sobic001G405500 Sobic003G144700--Sobic003G197200 Sobic003G144700--Sobic003G148600 Sobic007G213800 Sobic007G213800 Sobic003G144700--Sobic007G213800 Sobic003G144700--Sobic001G320900 Sobic003G144700--Sobic003G355100 Sobic003G144700--Sobic001G391500 Sobic003G144700--Sobic009G169000 Sobic003G123600 Sobic003G123600 Sobic003G144700--Sobic003G123600 Sobic006G230900 Sobic006G230900 Sobic003G144700--Sobic006G230900 Sobic004G280200--Sobic009G169000 Sobic004G280200--Sobic001G405500 Sobic003G369100 Sobic003G369100 Sobic004G280200--Sobic003G369100 Sobic004G280200--Sobic007G026600 Sobic003G086600 Sobic003G086600 Sobic004G280200--Sobic003G086600 Sobic003G367200 Sobic003G367200 Sobic004G280200--Sobic003G367200 Sobic004G280200--Sobic003G144700 Sobic006G275200 Sobic006G275200 Sobic004G280200--Sobic006G275200 Sobic002G261200 Sobic002G261200 Sobic004G280200--Sobic002G261200 Sobic003G197200--Sobic003G148600 Sobic003G197200--Sobic007G214600 Sobic003G197200--Sobic003G355100 Sobic003G197200--Sobic003G144700 Sobic001G443800 Sobic001G443800 Sobic003G197200--Sobic001G443800 Sobic001G481300 Sobic001G481300 Sobic003G197200--Sobic001G481300 Sobic001G201200 Sobic001G201200 Sobic003G197200--Sobic001G201200 Sobic004G109600 Sobic004G109600 Sobic003G197200--Sobic004G109600 Sobic003G197200--Sobic003G123600 Sobic003G355100--Sobic007G214600 Sobic003G355100--Sobic003G197200 Sobic003G355100--Sobic001G481300 Sobic003G355100--Sobic003G148600 Sobic003G355100--Sobic004G109600 Sobic003G394400 Sobic003G394400 Sobic003G355100--Sobic003G394400 Sobic001G108200 Sobic001G108200 Sobic003G355100--Sobic001G108200 Sobic003G355100--Sobic003G144700 Sobic004G166200 Sobic004G166200 Sobic003G355100--Sobic004G166200 Sobic007G214600--Sobic003G355100 Sobic007G214600--Sobic003G197200 Sobic007G214600--Sobic004G109600 Sobic007G214600--Sobic003G148600 Sobic007G214600--Sobic001G481300 Sobic010G198500 Sobic010G198500 Sobic007G214600--Sobic010G198500 Sobic001G371800 Sobic001G371800 Sobic007G214600--Sobic001G371800 Sobic007G214600--Sobic003G394400 Sobic007G214600--Sobic004G166200 Sobic003G148600--Sobic003G197200 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic003G148600--Sobic007G214600 Sobic003G148600--Sobic004G166200 Sobic003G148600--Sobic001G107800 Sobic003G148600--Sobic001G405500 Sobic003G148600--Sobic003G394400 Sobic001G107800--Sobic003G123600 Sobic001G107800--Sobic003G394400 Sobic007G214400 Sobic007G214400 Sobic001G107800--Sobic007G214400 Sobic001G107800--Sobic003G148600 Sobic001G107800--Sobic002G261200 Sobic001G107800--Sobic001G371800 Sobic001G254100 Sobic001G254100 Sobic001G107800--Sobic001G254100 Sobic001G107800--Sobic003G197200 Sobic002G068600 Sobic002G068600 Sobic001G107800--Sobic002G068600 Sobic007G026600--Sobic002G068600 Sobic007G026600--Sobic001G405500 Sobic007G026600--Sobic003G148600 Sobic007G026600--Sobic001G107800 Sobic007G026600--Sobic003G086600 Sobic007G026600--Sobic004G280200 Sobic007G026600--Sobic003G123600 Sobic007G026600--Sobic003G394400 Sobic007G026600--Sobic003G144700
Octagon: transcription factors


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