Gene annotation
Transcriptome id Sobic.001G426000.1
Synonym HSP17.4, Sb01g040030, ATHSP17.4
Functional annotation Up-reguralion under heat (PubMedID : 24916767)
hsp20/alpha crystallin family protein, putative, expressed
UniProt C5WQ43
Pfam PF00011
Panther DB PTHR11527 PTHR11527:SF152
NCBI CDD KOG0710; Molecular chaperone (small heat-shock protein Hsp26/Hsp42)
KEGG Orthology K13993; HSP20 family protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53540 : HSP20-like chaperones superfamily protein
RAP-DB (Rice) LOC_Os03g16040.1 : hsp20/alpha crystallin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a052789 , Zm00025a001763 , Zm00025a023554 , Zm00025a001758 , Zm00025a001756 , Zm00025a001753
Brachypodium KQK22418 , KQK20327
Barley HORVU2Hr1G120170.1 , HORVU3Hr1G007380.1 , HORVU3Hr1G006530.1 , HORVU4Hr1G060720.1 , HORVU4Hr1G060720.2 , HORVU3Hr1G007500.1 , HORVU3Hr1G007500.2 , HORVU3Hr1G007500.4
Wheat -
Populus -


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cDNA sequences
Sobic.001G426000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G228900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
2 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
3 Sobic.001G338600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
4 Sobic.010G196600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.003G310700 mal d 1-associated protein, putative, expressed -
6 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
7 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
8 Sobic.002G282300 expressed protein -
9 Sobic.002G278500 nodulin, putative, expressed -
10 Sobic.001G032800 armadillo/beta-catenin-like repeat containing protein, expressed K09562: HSPBP1, hsp70-interacting protein
11 Sobic.006G194000 DUF581 domain containing protein, expressed -
12 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
13 Sobic.004G283500 MATE domain containing protein, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
14 Sobic.004G109700 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.001G481300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.002G415600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed K09286: EREBP-like factor
17 Sobic.010G223600 ubiquitin family protein, putative, expressed K08770: ubiquitin C
18 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
19 Sobic.003G355100 expressed protein -
20 Sobic.005G122500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@IQ calmodulin-binding and BAG domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G426000 Sobic001G426000 Sobic004G228900 Sobic004G228900 Sobic001G426000--Sobic004G228900 Sobic009G169000 Sobic009G169000 Sobic001G426000--Sobic009G169000 Sobic001G338600 Sobic001G338600 Sobic001G426000--Sobic001G338600 Sobic010G196600 Sobic010G196600 Sobic001G426000--Sobic010G196600 Sobic003G310700 Sobic003G310700 Sobic001G426000--Sobic003G310700 Sobic001G320900 Sobic001G320900 Sobic001G426000--Sobic001G320900 Sobic003G144700 Sobic003G144700 Sobic001G426000--Sobic003G144700 Sobic002G282300 Sobic002G282300 Sobic001G426000--Sobic002G282300 Sobic002G278500 Sobic002G278500 Sobic001G426000--Sobic002G278500 Sobic005G122500 Sobic005G122500 Sobic004G228900--Sobic005G122500 Sobic004G228900--Sobic001G426000 Sobic004G228900--Sobic002G278500 Sobic004G228900--Sobic001G338600 Sobic003G350700 Sobic003G350700 Sobic004G228900--Sobic003G350700 Sobic004G249900 Sobic004G249900 Sobic004G228900--Sobic004G249900 Sobic004G228900--Sobic003G310700 Sobic010G234700 Sobic010G234700 Sobic004G228900--Sobic010G234700 Sobic010G104300 Sobic010G104300 Sobic004G228900--Sobic010G104300 Sobic009G169000--Sobic001G320900 Sobic009G169000--Sobic003G144700 Sobic004G280200 Sobic004G280200 Sobic009G169000--Sobic004G280200 Sobic003G197200 Sobic003G197200 Sobic009G169000--Sobic003G197200 Sobic003G355100 Sobic003G355100 Sobic009G169000--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic009G169000--Sobic007G214600 Sobic003G148600 Sobic003G148600 Sobic009G169000--Sobic003G148600 Sobic001G107800 Sobic001G107800 Sobic009G169000--Sobic001G107800 Sobic007G026600 Sobic007G026600 Sobic009G169000--Sobic007G026600 Sobic001G338600--Sobic002G282300 Sobic001G338600--Sobic002G278500 Sobic001G338600--Sobic004G228900 Sobic001G338600--Sobic001G426000 Sobic001G205350 Sobic001G205350 Sobic001G338600--Sobic001G205350 Sobic006G230900 Sobic006G230900 Sobic001G338600--Sobic006G230900 Sobic001G338600--Sobic003G144700 Sobic001G441100 Sobic001G441100 Sobic001G338600--Sobic001G441100 Sobic004G283500 Sobic004G283500 Sobic001G338600--Sobic004G283500 Sobic009G194400 Sobic009G194400 Sobic010G196600--Sobic009G194400 Sobic001G425500 Sobic001G425500 Sobic010G196600--Sobic001G425500 Sobic004G109700 Sobic004G109700 Sobic010G196600--Sobic004G109700 Sobic010G196600--Sobic004G283500 Sobic002G388900 Sobic002G388900 Sobic010G196600--Sobic002G388900 Sobic003G323201 Sobic003G323201 Sobic010G196600--Sobic003G323201 Sobic008G187001 Sobic008G187001 Sobic010G196600--Sobic008G187001 Sobic001G425600 Sobic001G425600 Sobic010G196600--Sobic001G425600 Sobic004G109600 Sobic004G109600 Sobic010G196600--Sobic004G109600 Sobic003G310700--Sobic001G426000 Sobic001G032800 Sobic001G032800 Sobic003G310700--Sobic001G032800 Sobic003G310700--Sobic004G228900 Sobic004G036600 Sobic004G036600 Sobic003G310700--Sobic004G036600 Sobic009G217000 Sobic009G217000 Sobic003G310700--Sobic009G217000 Sobic006G267200 Sobic006G267200 Sobic003G310700--Sobic006G267200 Sobic003G310700--Sobic009G169000 Sobic010G223600 Sobic010G223600 Sobic003G310700--Sobic010G223600 Sobic006G194000 Sobic006G194000 Sobic003G310700--Sobic006G194000 Sobic009G036000 Sobic009G036000 Sobic001G320900--Sobic009G036000 Sobic001G320900--Sobic003G144700 Sobic001G320900--Sobic009G169000 Sobic001G391500 Sobic001G391500 Sobic001G320900--Sobic001G391500 Sobic001G320900--Sobic003G148600 Sobic009G036100 Sobic009G036100 Sobic001G320900--Sobic009G036100 Sobic001G320900--Sobic003G197200 Sobic001G320900--Sobic003G355100 Sobic001G405500 Sobic001G405500 Sobic001G320900--Sobic001G405500 Sobic003G144700--Sobic003G197200 Sobic003G144700--Sobic003G148600 Sobic007G213800 Sobic007G213800 Sobic003G144700--Sobic007G213800 Sobic003G144700--Sobic001G320900 Sobic003G144700--Sobic003G355100 Sobic003G144700--Sobic001G391500 Sobic003G144700--Sobic009G169000 Sobic003G123600 Sobic003G123600 Sobic003G144700--Sobic003G123600 Sobic003G144700--Sobic006G230900 Sobic002G282300--Sobic006G230900 Sobic002G282300--Sobic007G213800 Sobic002G282300--Sobic001G205350 Sobic002G282300--Sobic001G338600 Sobic002G282300--Sobic003G144700 Sobic002G282300--Sobic003G197200 Sobic006G231200 Sobic006G231200 Sobic002G282300--Sobic006G231200 Sobic002G282300--Sobic001G320900 Sobic004G169200 Sobic004G169200 Sobic002G282300--Sobic004G169200 Sobic002G278500--Sobic004G228900 Sobic002G278500--Sobic001G441100 Sobic002G278500--Sobic001G338600 Sobic002G278500--Sobic005G122500 Sobic009G217600 Sobic009G217600 Sobic002G278500--Sobic009G217600 Sobic002G294700 Sobic002G294700 Sobic002G278500--Sobic002G294700 Sobic002G278500--Sobic002G282300 Sobic001G341600 Sobic001G341600 Sobic002G278500--Sobic001G341600 Sobic008G177800 Sobic008G177800 Sobic002G278500--Sobic008G177800
Octagon: transcription factors


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