Gene annotation
Transcriptome id Sobic.001G338600.2
Synonym SbLBD7, lateral organ boundaries, Sb01g032580, LBD40, SbLBD7;lateral organ boundaries
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments" (PubMedID : 20499123)
SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
DUF260 domain containing protein, putative, expressed
UniProt A0A1Z5S8Y3
Pfam PF03195
Panther DB PTHR31304 PTHR31304:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G02550 : LOB domain-containing protein 41
RAP-DB (Rice) LOC_Os01g32770.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a044237 , Zm00025a037948 , Zm00025a023631 , Zm00025a037950 , Zm00025a002858 , Zm00025a007419
Brachypodium KQJ88280 , KQJ88281
Barley HORVU2Hr1G066080.1 , HORVU2Hr1G066080.2 , HORVU4Hr1G086700.1 , HORVU3Hr1G016320.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G338600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G282300 expressed protein -
2 Sobic.002G278500 nodulin, putative, expressed -
3 Sobic.004G228900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
4 Sobic.001G426000 Up-reguralion under heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
5 Sobic.001G205350 - -
6 Sobic.006G230900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
7 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
8 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
9 Sobic.004G283500 MATE domain containing protein, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
10 Sobic.006G194000 DUF581 domain containing protein, expressed -
11 Sobic.002G415600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed K09286: EREBP-like factor
12 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
13 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
14 Sobic.005G122500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@IQ calmodulin-binding and BAG domain containing protein, putative, expressed -
15 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
16 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
17 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
18 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
19 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
20 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -


Gene co-expression network
sample Sobic001G338600 Sobic001G338600 Sobic002G282300 Sobic002G282300 Sobic001G338600--Sobic002G282300 Sobic002G278500 Sobic002G278500 Sobic001G338600--Sobic002G278500 Sobic004G228900 Sobic004G228900 Sobic001G338600--Sobic004G228900 Sobic001G426000 Sobic001G426000 Sobic001G338600--Sobic001G426000 Sobic001G205350 Sobic001G205350 Sobic001G338600--Sobic001G205350 Sobic006G230900 Sobic006G230900 Sobic001G338600--Sobic006G230900 Sobic003G144700 Sobic003G144700 Sobic001G338600--Sobic003G144700 Sobic001G441100 Sobic001G441100 Sobic001G338600--Sobic001G441100 Sobic004G283500 Sobic004G283500 Sobic001G338600--Sobic004G283500 Sobic002G282300--Sobic006G230900 Sobic007G213800 Sobic007G213800 Sobic002G282300--Sobic007G213800 Sobic002G282300--Sobic001G205350 Sobic002G282300--Sobic001G338600 Sobic002G282300--Sobic003G144700 Sobic003G197200 Sobic003G197200 Sobic002G282300--Sobic003G197200 Sobic006G231200 Sobic006G231200 Sobic002G282300--Sobic006G231200 Sobic001G320900 Sobic001G320900 Sobic002G282300--Sobic001G320900 Sobic004G169200 Sobic004G169200 Sobic002G282300--Sobic004G169200 Sobic002G278500--Sobic004G228900 Sobic002G278500--Sobic001G441100 Sobic002G278500--Sobic001G338600 Sobic005G122500 Sobic005G122500 Sobic002G278500--Sobic005G122500 Sobic009G217600 Sobic009G217600 Sobic002G278500--Sobic009G217600 Sobic002G294700 Sobic002G294700 Sobic002G278500--Sobic002G294700 Sobic002G278500--Sobic002G282300 Sobic001G341600 Sobic001G341600 Sobic002G278500--Sobic001G341600 Sobic008G177800 Sobic008G177800 Sobic002G278500--Sobic008G177800 Sobic004G228900--Sobic005G122500 Sobic004G228900--Sobic001G426000 Sobic004G228900--Sobic002G278500 Sobic004G228900--Sobic001G338600 Sobic003G350700 Sobic003G350700 Sobic004G228900--Sobic003G350700 Sobic004G249900 Sobic004G249900 Sobic004G228900--Sobic004G249900 Sobic003G310700 Sobic003G310700 Sobic004G228900--Sobic003G310700 Sobic010G234700 Sobic010G234700 Sobic004G228900--Sobic010G234700 Sobic010G104300 Sobic010G104300 Sobic004G228900--Sobic010G104300 Sobic001G426000--Sobic004G228900 Sobic009G169000 Sobic009G169000 Sobic001G426000--Sobic009G169000 Sobic001G426000--Sobic001G338600 Sobic010G196600 Sobic010G196600 Sobic001G426000--Sobic010G196600 Sobic001G426000--Sobic003G310700 Sobic001G426000--Sobic001G320900 Sobic001G426000--Sobic003G144700 Sobic001G426000--Sobic002G282300 Sobic001G426000--Sobic002G278500 Sobic001G205350--Sobic002G282300 Sobic001G205350--Sobic006G230900 Sobic001G205350--Sobic007G213800 Sobic001G205350--Sobic004G169200 Sobic001G205350--Sobic001G338600 Sobic001G205350--Sobic006G231200 Sobic002G189100 Sobic002G189100 Sobic001G205350--Sobic002G189100 Sobic003G380900 Sobic003G380900 Sobic001G205350--Sobic003G380900 Sobic003G428700 Sobic003G428700 Sobic001G205350--Sobic003G428700 Sobic006G230900--Sobic006G231200 Sobic006G231100 Sobic006G231100 Sobic006G230900--Sobic006G231100 Sobic006G230900--Sobic002G282300 Sobic006G230900--Sobic007G213800 Sobic010G217800 Sobic010G217800 Sobic006G230900--Sobic010G217800 Sobic002G415600 Sobic002G415600 Sobic006G230900--Sobic002G415600 Sobic006G230900--Sobic003G144700 Sobic003G123600 Sobic003G123600 Sobic006G230900--Sobic003G123600 Sobic006G230900--Sobic003G197200 Sobic003G144700--Sobic003G197200 Sobic003G148600 Sobic003G148600 Sobic003G144700--Sobic003G148600 Sobic003G144700--Sobic007G213800 Sobic003G144700--Sobic001G320900 Sobic003G355100 Sobic003G355100 Sobic003G144700--Sobic003G355100 Sobic001G391500 Sobic001G391500 Sobic003G144700--Sobic001G391500 Sobic003G144700--Sobic009G169000 Sobic003G144700--Sobic003G123600 Sobic003G144700--Sobic006G230900 Sobic001G035000 Sobic001G035000 Sobic001G441100--Sobic001G035000 Sobic001G441100--Sobic009G217600 Sobic001G077400 Sobic001G077400 Sobic001G441100--Sobic001G077400 Sobic001G441100--Sobic001G341600 Sobic005G037000 Sobic005G037000 Sobic001G441100--Sobic005G037000 Sobic004G280900 Sobic004G280900 Sobic001G441100--Sobic004G280900 Sobic001G441100--Sobic002G278500 Sobic001G209800 Sobic001G209800 Sobic001G441100--Sobic001G209800 Sobic002G140300 Sobic002G140300 Sobic001G441100--Sobic002G140300 Sobic004G283500--Sobic010G196600 Sobic007G036900 Sobic007G036900 Sobic004G283500--Sobic007G036900 Sobic004G283500--Sobic001G320900 Sobic004G283500--Sobic001G391500 Sobic009G036000 Sobic009G036000 Sobic004G283500--Sobic009G036000 Sobic002G339000 Sobic002G339000 Sobic004G283500--Sobic002G339000 Sobic001G440200 Sobic001G440200 Sobic004G283500--Sobic001G440200 Sobic007G155200 Sobic007G155200 Sobic004G283500--Sobic007G155200 Sobic004G283500--Sobic003G144700
Octagon: transcription factors


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