Gene annotation
Transcriptome id Sobic.004G283500.1
Synonym Sb04g031980
Functional annotation MATE domain containing protein, expressed
UniProt C5Y193
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF172
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT4G29140 : MATE efflux family protein
RAP-DB (Rice) LOC_Os02g45380.1 : MATE domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056760 , Zm00025a010158 , Zm00025a003086 , Zm00025a021500 , Zm00025a016364
Brachypodium KQJ84119 , PNT77806 , KQK00755 , KQK22742 , KQK22741 , PNT77807
Barley HORVU2Hr1G094870.1 , HORVU2Hr1G094870.2 , HORVU2Hr1G094870.3 , HORVU2Hr1G094870.4 , HORVU2Hr1G094870.5 , HORVU0Hr1G025760.4 , HORVU0Hr1G025760.5 , HORVU0Hr1G025760.2 , HORVU0Hr1G025760.3 , HORVU0Hr1G025760.1 , HORVU6Hr1G065390.1 , HORVU6Hr1G065390.3 , HORVU6Hr1G065390.2 , HORVU6Hr1G065390.5 , HORVU6Hr1G065390.4
Wheat TraesCS4A02G350200 , TraesCS5D02G521600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G196600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.007G036900 triacylglycerol lipase like protein, putative, expressed -
3 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
4 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
6 Sobic.002G339000 OsFBX257 - F-box domain containing protein, expressed -
7 Sobic.001G440200 senescence-associated protein, putative, expressed -
8 Sobic.007G155200 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
9 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
10 Sobic.004G004500 lactate/malate dehydrogenase, putative, expressed K00016: LDH, L-lactate dehydrogenase
11 Sobic.001G035100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@ZOS3-21 - C2H2 zinc finger protein, expressed -
12 Sobic.009G189501 - -
13 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
14 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
15 Sobic.002G282300 expressed protein -
16 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
17 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G426000 Up-reguralion under heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
19 Sobic.009G194400 expressed protein -
20 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -


Gene co-expression network
sample Sobic004G283500 Sobic004G283500 Sobic010G196600 Sobic010G196600 Sobic004G283500--Sobic010G196600 Sobic007G036900 Sobic007G036900 Sobic004G283500--Sobic007G036900 Sobic001G320900 Sobic001G320900 Sobic004G283500--Sobic001G320900 Sobic001G391500 Sobic001G391500 Sobic004G283500--Sobic001G391500 Sobic009G036000 Sobic009G036000 Sobic004G283500--Sobic009G036000 Sobic002G339000 Sobic002G339000 Sobic004G283500--Sobic002G339000 Sobic001G440200 Sobic001G440200 Sobic004G283500--Sobic001G440200 Sobic007G155200 Sobic007G155200 Sobic004G283500--Sobic007G155200 Sobic003G144700 Sobic003G144700 Sobic004G283500--Sobic003G144700 Sobic009G194400 Sobic009G194400 Sobic010G196600--Sobic009G194400 Sobic001G425500 Sobic001G425500 Sobic010G196600--Sobic001G425500 Sobic004G109700 Sobic004G109700 Sobic010G196600--Sobic004G109700 Sobic010G196600--Sobic004G283500 Sobic002G388900 Sobic002G388900 Sobic010G196600--Sobic002G388900 Sobic003G323201 Sobic003G323201 Sobic010G196600--Sobic003G323201 Sobic008G187001 Sobic008G187001 Sobic010G196600--Sobic008G187001 Sobic001G425600 Sobic001G425600 Sobic010G196600--Sobic001G425600 Sobic004G109600 Sobic004G109600 Sobic010G196600--Sobic004G109600 Sobic004G004500 Sobic004G004500 Sobic007G036900--Sobic004G004500 Sobic007G036900--Sobic008G187001 Sobic004G229800 Sobic004G229800 Sobic007G036900--Sobic004G229800 Sobic001G256700 Sobic001G256700 Sobic007G036900--Sobic001G256700 Sobic004G141200 Sobic004G141200 Sobic007G036900--Sobic004G141200 Sobic007G036900--Sobic002G339000 Sobic003G364600 Sobic003G364600 Sobic007G036900--Sobic003G364600 Sobic001G108200 Sobic001G108200 Sobic007G036900--Sobic001G108200 Sobic001G079300 Sobic001G079300 Sobic007G036900--Sobic001G079300 Sobic001G320900--Sobic009G036000 Sobic001G320900--Sobic003G144700 Sobic009G169000 Sobic009G169000 Sobic001G320900--Sobic009G169000 Sobic001G320900--Sobic001G391500 Sobic003G148600 Sobic003G148600 Sobic001G320900--Sobic003G148600 Sobic009G036100 Sobic009G036100 Sobic001G320900--Sobic009G036100 Sobic003G197200 Sobic003G197200 Sobic001G320900--Sobic003G197200 Sobic003G355100 Sobic003G355100 Sobic001G320900--Sobic003G355100 Sobic001G405500 Sobic001G405500 Sobic001G320900--Sobic001G405500 Sobic001G459800 Sobic001G459800 Sobic001G391500--Sobic001G459800 Sobic001G391500--Sobic004G141200 Sobic001G391500--Sobic003G144700 Sobic007G213800 Sobic007G213800 Sobic001G391500--Sobic007G213800 Sobic001G391500--Sobic001G320900 Sobic001G391500--Sobic003G148600 Sobic003G369100 Sobic003G369100 Sobic001G391500--Sobic003G369100 Sobic001G138600 Sobic001G138600 Sobic001G391500--Sobic001G138600 Sobic007G074000 Sobic007G074000 Sobic001G391500--Sobic007G074000 Sobic009G036000--Sobic001G320900 Sobic009G036000--Sobic009G036100 Sobic009G247900 Sobic009G247900 Sobic009G036000--Sobic009G247900 Sobic001G383700 Sobic001G383700 Sobic009G036000--Sobic001G383700 Sobic009G036000--Sobic003G364600 Sobic009G036000--Sobic007G074000 Sobic001G308300 Sobic001G308300 Sobic009G036000--Sobic001G308300 Sobic009G036000--Sobic001G391500 Sobic004G169200 Sobic004G169200 Sobic009G036000--Sobic004G169200 Sobic002G339000--Sobic004G004500 Sobic002G339000--Sobic001G256700 Sobic002G339000--Sobic007G036900 Sobic003G148300 Sobic003G148300 Sobic002G339000--Sobic003G148300 Sobic001G195200 Sobic001G195200 Sobic002G339000--Sobic001G195200 Sobic002G339000--Sobic004G169200 Sobic004G108200 Sobic004G108200 Sobic002G339000--Sobic004G108200 Sobic002G395300 Sobic002G395300 Sobic002G339000--Sobic002G395300 Sobic007G214600 Sobic007G214600 Sobic002G339000--Sobic007G214600 Sobic001G440200--Sobic010G196600 Sobic001G440200--Sobic004G283500 Sobic001G440200--Sobic009G194400 Sobic001G035100 Sobic001G035100 Sobic001G440200--Sobic001G035100 Sobic001G279701 Sobic001G279701 Sobic001G440200--Sobic001G279701 Sobic003G370600 Sobic003G370600 Sobic001G440200--Sobic003G370600 Sobic006G170000 Sobic006G170000 Sobic001G440200--Sobic006G170000 Sobic004G097100 Sobic004G097100 Sobic001G440200--Sobic004G097100 Sobic001G440200--Sobic008G187001 Sobic009G224100 Sobic009G224100 Sobic007G155200--Sobic009G224100 Sobic002G184200 Sobic002G184200 Sobic007G155200--Sobic002G184200 Sobic005G045900 Sobic005G045900 Sobic007G155200--Sobic005G045900 Sobic002G140400 Sobic002G140400 Sobic007G155200--Sobic002G140400 Sobic004G037000 Sobic004G037000 Sobic007G155200--Sobic004G037000 Sobic007G155200--Sobic010G196600 Sobic004G228500 Sobic004G228500 Sobic007G155200--Sobic004G228500 Sobic003G349600 Sobic003G349600 Sobic007G155200--Sobic003G349600 Sobic002G139400 Sobic002G139400 Sobic007G155200--Sobic002G139400 Sobic003G144700--Sobic003G197200 Sobic003G144700--Sobic003G148600 Sobic003G144700--Sobic007G213800 Sobic003G144700--Sobic001G320900 Sobic003G144700--Sobic003G355100 Sobic003G144700--Sobic001G391500 Sobic003G144700--Sobic009G169000 Sobic003G123600 Sobic003G123600 Sobic003G144700--Sobic003G123600 Sobic006G230900 Sobic006G230900 Sobic003G144700--Sobic006G230900
Octagon: transcription factors


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