Gene annotation
Transcriptome id Sobic.004G109700.1
Synonym Sb04g008970
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XZ27
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF146
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G40070 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g34400.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G109600 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.001G425600 "similar to 17.4 kDa class I heat shock protein 3, maped into a unique stay green QTL (QSTG11_1) involved in drought tolerance."(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@similar to 17.4 kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
3 Sobic.001G425500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
4 Sobic.001G481300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
5 Sobic.010G196600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.009G194400 expressed protein -
7 Sobic.003G323201 - -
8 Sobic.007G214600 EF hand family protein, putative, expressed -
9 Sobic.001G279350 - -
10 Sobic.003G355100 expressed protein -
11 Sobic.004G273300 ubiquitin family protein, putative, expressed K08770: ubiquitin C
12 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
13 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.006G207000 expressed protein -
15 Sobic.002G339000 OsFBX257 - F-box domain containing protein, expressed -
16 Sobic.001G201200 - -
17 Sobic.001G426000 Up-reguralion under heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
18 Sobic.007G147700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
19 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
20 Sobic.004G283500 MATE domain containing protein, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family


Gene co-expression network
sample Sobic004G109700 Sobic004G109700 Sobic004G109600 Sobic004G109600 Sobic004G109700--Sobic004G109600 Sobic001G425600 Sobic001G425600 Sobic004G109700--Sobic001G425600 Sobic001G425500 Sobic001G425500 Sobic004G109700--Sobic001G425500 Sobic001G481300 Sobic001G481300 Sobic004G109700--Sobic001G481300 Sobic010G196600 Sobic010G196600 Sobic004G109700--Sobic010G196600 Sobic009G194400 Sobic009G194400 Sobic004G109700--Sobic009G194400 Sobic003G323201 Sobic003G323201 Sobic004G109700--Sobic003G323201 Sobic007G214600 Sobic007G214600 Sobic004G109700--Sobic007G214600 Sobic001G279350 Sobic001G279350 Sobic004G109700--Sobic001G279350 Sobic004G109600--Sobic001G481300 Sobic003G355100 Sobic003G355100 Sobic004G109600--Sobic003G355100 Sobic004G109600--Sobic007G214600 Sobic004G109600--Sobic004G109700 Sobic003G197200 Sobic003G197200 Sobic004G109600--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic004G109600--Sobic010G198500 Sobic003G148600 Sobic003G148600 Sobic004G109600--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic004G109600--Sobic001G371800 Sobic001G201200 Sobic001G201200 Sobic004G109600--Sobic001G201200 Sobic001G425600--Sobic001G425500 Sobic001G425600--Sobic004G109700 Sobic004G273300 Sobic004G273300 Sobic001G425600--Sobic004G273300 Sobic001G425600--Sobic009G194400 Sobic001G425600--Sobic004G109600 Sobic001G425600--Sobic001G481300 Sobic001G425600--Sobic010G196600 Sobic001G425600--Sobic001G279350 Sobic001G425600--Sobic003G323201 Sobic001G425500--Sobic001G425600 Sobic001G425500--Sobic004G109700 Sobic001G425500--Sobic009G194400 Sobic001G425500--Sobic010G196600 Sobic001G425500--Sobic004G273300 Sobic001G425500--Sobic003G323201 Sobic004G092800 Sobic004G092800 Sobic001G425500--Sobic004G092800 Sobic001G425500--Sobic004G109600 Sobic001G425500--Sobic001G481300 Sobic001G481300--Sobic003G355100 Sobic001G481300--Sobic004G109600 Sobic001G481300--Sobic003G197200 Sobic001G481300--Sobic007G214600 Sobic001G481300--Sobic001G279350 Sobic001G481300--Sobic004G109700 Sobic001G481300--Sobic003G148600 Sobic001G481300--Sobic001G371800 Sobic001G481300--Sobic010G198500 Sobic010G196600--Sobic009G194400 Sobic010G196600--Sobic001G425500 Sobic010G196600--Sobic004G109700 Sobic004G283500 Sobic004G283500 Sobic010G196600--Sobic004G283500 Sobic002G388900 Sobic002G388900 Sobic010G196600--Sobic002G388900 Sobic010G196600--Sobic003G323201 Sobic008G187001 Sobic008G187001 Sobic010G196600--Sobic008G187001 Sobic010G196600--Sobic001G425600 Sobic010G196600--Sobic004G109600 Sobic009G194400--Sobic010G196600 Sobic009G194400--Sobic001G425500 Sobic009G194400--Sobic003G323201 Sobic009G194400--Sobic001G425600 Sobic003G370600 Sobic003G370600 Sobic009G194400--Sobic003G370600 Sobic009G194400--Sobic004G109700 Sobic004G097100 Sobic004G097100 Sobic009G194400--Sobic004G097100 Sobic009G194400--Sobic002G388900 Sobic009G194400--Sobic004G092800 Sobic003G323201--Sobic009G194400 Sobic003G323201--Sobic010G196600 Sobic003G323201--Sobic001G425500 Sobic003G323201--Sobic004G109700 Sobic003G323201--Sobic001G425600 Sobic004G308900 Sobic004G308900 Sobic003G323201--Sobic004G308900 Sobic003G323201--Sobic004G109600 Sobic003G323201--Sobic002G388900 Sobic009G144700 Sobic009G144700 Sobic003G323201--Sobic009G144700 Sobic007G214600--Sobic003G355100 Sobic007G214600--Sobic003G197200 Sobic007G214600--Sobic004G109600 Sobic007G214600--Sobic003G148600 Sobic007G214600--Sobic001G481300 Sobic007G214600--Sobic010G198500 Sobic007G214600--Sobic001G371800 Sobic003G394400 Sobic003G394400 Sobic007G214600--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic007G214600--Sobic004G166200 Sobic001G279350--Sobic001G481300 Sobic001G279350--Sobic004G109600 Sobic007G147700 Sobic007G147700 Sobic001G279350--Sobic007G147700 Sobic001G279350--Sobic003G355100 Sobic001G279350--Sobic001G425600 Sobic001G279350--Sobic004G109700 Sobic001G279350--Sobic003G197200 Sobic001G279350--Sobic001G425500 Sobic001G279350--Sobic007G214600
Octagon: transcription factors


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