Gene annotation
Transcriptome id Sobic.001G425500.1
Synonym Sb01g039990, HSP18.2
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Up-reguralion under heat (PubMedID : 24916767)
Up-reguralion under combine stress of drought and heat (PubMedID : 24916767)
hsp20/alpha crystallin family protein, putative, expressed
UniProt C5WQ38
Pfam PF00011
Panther DB PTHR11527 PTHR11527:SF152
NCBI CDD KOG0710; Molecular chaperone (small heat-shock protein Hsp26/Hsp42)
KEGG Orthology K13993; HSP20 family protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53540 : HSP20-like chaperones superfamily protein
RAP-DB (Rice) LOC_Os03g16030.1 : hsp20/alpha crystallin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a052789 , Zm00025a034974 , Zm00025a023567 , Zm00025a001763 , Zm00025a001758 , Zm00025a001756 , Zm00025a001753
Brachypodium KQK22418 , KQK20327
Barley HORVU2Hr1G120170.1 , HORVU3Hr1G006530.1 , HORVU4Hr1G060760.1 , HORVU4Hr1G060720.1 , HORVU4Hr1G060720.2
Wheat TraesCS4A02G092200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G425600 "similar to 17.4 kDa class I heat shock protein 3, maped into a unique stay green QTL (QSTG11_1) involved in drought tolerance."(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@similar to 17.4 kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
2 Sobic.004G109700 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.009G194400 expressed protein -
4 Sobic.010G196600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G273300 ubiquitin family protein, putative, expressed K08770: ubiquitin C
6 Sobic.003G323201 - -
7 Sobic.004G092800 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
8 Sobic.004G109600 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.001G481300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
10 Sobic.001G279350 - -
11 Sobic.006G207000 expressed protein -
12 Sobic.008G102900 expressed protein -
13 Sobic.001G232500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
14 Sobic.003G370600 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
15 Sobic.002G339000 OsFBX257 - F-box domain containing protein, expressed -
16 Sobic.002G100832 - -
17 Sobic.004G341000 OsFBX66 - F-box domain containing protein, expressed -
18 Sobic.010G104300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
19 Sobic.002G388800 cytochrome P450 72A1, putative, expressed -
20 Sobic.007G214600 EF hand family protein, putative, expressed -


Gene co-expression network
sample Sobic001G425500 Sobic001G425500 Sobic001G425600 Sobic001G425600 Sobic001G425500--Sobic001G425600 Sobic004G109700 Sobic004G109700 Sobic001G425500--Sobic004G109700 Sobic009G194400 Sobic009G194400 Sobic001G425500--Sobic009G194400 Sobic010G196600 Sobic010G196600 Sobic001G425500--Sobic010G196600 Sobic004G273300 Sobic004G273300 Sobic001G425500--Sobic004G273300 Sobic003G323201 Sobic003G323201 Sobic001G425500--Sobic003G323201 Sobic004G092800 Sobic004G092800 Sobic001G425500--Sobic004G092800 Sobic004G109600 Sobic004G109600 Sobic001G425500--Sobic004G109600 Sobic001G481300 Sobic001G481300 Sobic001G425500--Sobic001G481300 Sobic001G425600--Sobic001G425500 Sobic001G425600--Sobic004G109700 Sobic001G425600--Sobic004G273300 Sobic001G425600--Sobic009G194400 Sobic001G425600--Sobic004G109600 Sobic001G425600--Sobic001G481300 Sobic001G425600--Sobic010G196600 Sobic001G279350 Sobic001G279350 Sobic001G425600--Sobic001G279350 Sobic001G425600--Sobic003G323201 Sobic004G109700--Sobic004G109600 Sobic004G109700--Sobic001G425600 Sobic004G109700--Sobic001G425500 Sobic004G109700--Sobic001G481300 Sobic004G109700--Sobic010G196600 Sobic004G109700--Sobic009G194400 Sobic004G109700--Sobic003G323201 Sobic007G214600 Sobic007G214600 Sobic004G109700--Sobic007G214600 Sobic004G109700--Sobic001G279350 Sobic009G194400--Sobic010G196600 Sobic009G194400--Sobic001G425500 Sobic009G194400--Sobic003G323201 Sobic009G194400--Sobic001G425600 Sobic003G370600 Sobic003G370600 Sobic009G194400--Sobic003G370600 Sobic009G194400--Sobic004G109700 Sobic004G097100 Sobic004G097100 Sobic009G194400--Sobic004G097100 Sobic002G388900 Sobic002G388900 Sobic009G194400--Sobic002G388900 Sobic009G194400--Sobic004G092800 Sobic010G196600--Sobic009G194400 Sobic010G196600--Sobic001G425500 Sobic010G196600--Sobic004G109700 Sobic004G283500 Sobic004G283500 Sobic010G196600--Sobic004G283500 Sobic010G196600--Sobic002G388900 Sobic010G196600--Sobic003G323201 Sobic008G187001 Sobic008G187001 Sobic010G196600--Sobic008G187001 Sobic010G196600--Sobic001G425600 Sobic010G196600--Sobic004G109600 Sobic004G273300--Sobic001G425600 Sobic004G273300--Sobic001G425500 Sobic004G273300--Sobic004G109700 Sobic004G273300--Sobic001G481300 Sobic004G273300--Sobic004G109600 Sobic001G201200 Sobic001G201200 Sobic004G273300--Sobic001G201200 Sobic002G284000 Sobic002G284000 Sobic004G273300--Sobic002G284000 Sobic004G273300--Sobic001G279350 Sobic004G273300--Sobic009G194400 Sobic003G323201--Sobic009G194400 Sobic003G323201--Sobic010G196600 Sobic003G323201--Sobic001G425500 Sobic003G323201--Sobic004G109700 Sobic003G323201--Sobic001G425600 Sobic004G308900 Sobic004G308900 Sobic003G323201--Sobic004G308900 Sobic003G323201--Sobic004G109600 Sobic003G323201--Sobic002G388900 Sobic009G144700 Sobic009G144700 Sobic003G323201--Sobic009G144700 Sobic001G232500 Sobic001G232500 Sobic004G092800--Sobic001G232500 Sobic001G065900 Sobic001G065900 Sobic004G092800--Sobic001G065900 Sobic004G092800--Sobic003G370600 Sobic002G388800 Sobic002G388800 Sobic004G092800--Sobic002G388800 Sobic004G092800--Sobic001G425500 Sobic004G263100 Sobic004G263100 Sobic004G092800--Sobic004G263100 Sobic004G092800--Sobic009G194400 Sobic002G369301 Sobic002G369301 Sobic004G092800--Sobic002G369301 Sobic006G170000 Sobic006G170000 Sobic004G092800--Sobic006G170000 Sobic004G109600--Sobic001G481300 Sobic003G355100 Sobic003G355100 Sobic004G109600--Sobic003G355100 Sobic004G109600--Sobic007G214600 Sobic004G109600--Sobic004G109700 Sobic003G197200 Sobic003G197200 Sobic004G109600--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic004G109600--Sobic010G198500 Sobic003G148600 Sobic003G148600 Sobic004G109600--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic004G109600--Sobic001G371800 Sobic004G109600--Sobic001G201200 Sobic001G481300--Sobic003G355100 Sobic001G481300--Sobic004G109600 Sobic001G481300--Sobic003G197200 Sobic001G481300--Sobic007G214600 Sobic001G481300--Sobic001G279350 Sobic001G481300--Sobic004G109700 Sobic001G481300--Sobic003G148600 Sobic001G481300--Sobic001G371800 Sobic001G481300--Sobic010G198500
Octagon: transcription factors


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