Gene annotation
Transcriptome id Sobic.004G273300.1
Synonym UBQ10, Sb04g031060
Functional annotation ubiquitin family protein, putative, expressed
UniProt C5Y0G2
Pfam PF11976
Panther DB PTHR10666:SF150 PTHR10666
NCBI CDD KOG0001; Ubiquitin and ubiquitin-like proteins KOG0005Ubiquitin-like protein
KEGG Orthology K08770; ubiquitin C
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G05320 : polyubiquitin 10
RAP-DB (Rice) LOC_Os06g46770.2 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a042947 , Zm00025a005173 , Zm00025a001454 , Zm00025a001458 , Zm00025a036147
Brachypodium PNT60865 , KQJ91591 , KQJ95133 , KQJ93465 , KQK17173 , KQK17147 , PNT77708 , KQK17095 , KQK16840 , KQJ93464 , KQK00865 , KQK00864 , PNT65948
Barley HORVU6Hr1G026280.8 , HORVU6Hr1G026280.9 , HORVU6Hr1G026280.6 , HORVU6Hr1G026280.7 , HORVU6Hr1G026280.4 , HORVU6Hr1G026280.5 , HORVU6Hr1G026280.2 , HORVU6Hr1G026280.3 , HORVU7Hr1G103170.19 , HORVU7Hr1G103170.18 , HORVU7Hr1G103170.17 , HORVU7Hr1G103170.16 , HORVU7Hr1G103170.15 , HORVU7Hr1G103170.14 , HORVU7Hr1G103170.13 , HORVU7Hr1G103170.12 , HORVU7Hr1G103170.11 , HORVU7Hr1G102840.10 , HORVU7Hr1G102840.11 , HORVU4Hr1G001170.5 , HORVU4Hr1G001170.4 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU5Hr1G019590.13 , HORVU5Hr1G019590.12 , HORVU5Hr1G019590.11 , HORVU5Hr1G019590.10 , HORVU5Hr1G019590.15 , HORVU5Hr1G019590.14 , HORVU6Hr1G020140.9 , HORVU6Hr1G020140.8 , HORVU6Hr1G020140.7 , HORVU6Hr1G020140.6 , HORVU6Hr1G020140.5 , HORVU6Hr1G020140.4 , HORVU6Hr1G020140.3 , HORVU6Hr1G020140.2 , HORVU6Hr1G020140.1 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU5Hr1G072680.3 , HORVU7Hr1G102840.1 , HORVU2Hr1G104440.2 , HORVU2Hr1G104440.1 , HORVU2Hr1G104440.7 , HORVU2Hr1G104440.5 , HORVU7Hr1G102840.9 , HORVU4Hr1G089720.4 , HORVU4Hr1G089720.5 , HORVU4Hr1G089720.6 , HORVU4Hr1G089720.7 , HORVU4Hr1G089720.1 , HORVU4Hr1G089720.2 , HORVU4Hr1G089720.3 , HORVU4Hr1G089720.8 , HORVU5Hr1G019600.8 , HORVU5Hr1G019600.3 , HORVU5Hr1G019600.2 , HORVU5Hr1G019600.1 , HORVU5Hr1G019600.7 , HORVU5Hr1G019600.6 , HORVU5Hr1G019600.5 , HORVU5Hr1G019600.4 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU7Hr1G103550.2 , HORVU7Hr1G103550.4 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.4 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.3 , HORVU6Hr1G026200.1 , HORVU6Hr1G026200.8 , HORVU1Hr1G082070.1 , HORVU7Hr1G102840.4 , HORVU6Hr1G026260.8 , HORVU6Hr1G026260.9 , HORVU7Hr1G102840.2 , HORVU7Hr1G102840.3 , HORVU6Hr1G026260.6 , HORVU6Hr1G026260.7 , HORVU6Hr1G026260.1 , HORVU6Hr1G026260.2 , HORVU7Hr1G103330.11 , HORVU7Hr1G103330.12 , HORVU6Hr1G026200.19 , HORVU6Hr1G026200.14 , HORVU6Hr1G026200.15 , HORVU6Hr1G026200.10 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.13 , HORVU7Hr1G107010.1 , HORVU6Hr1G026260.21 , HORVU6Hr1G026260.20 , HORVU7Hr1G103330.8 , HORVU7Hr1G103330.5 , HORVU7Hr1G103330.4 , HORVU7Hr1G103330.6 , HORVU7Hr1G103330.1 , HORVU7Hr1G103330.3 , HORVU7Hr1G103330.2 , HORVU7Hr1G103160.1 , HORVU7Hr1G103160.2 , HORVU7Hr1G103160.3 , HORVU7Hr1G103160.4 , HORVU6Hr1G016150.5 , HORVU6Hr1G016150.4 , HORVU6Hr1G016150.6 , HORVU6Hr1G016150.1 , HORVU6Hr1G016150.3 , HORVU6Hr1G016150.2 , HORVU4Hr1G040980.1 , HORVU6Hr1G021700.4 , HORVU6Hr1G021700.5 , HORVU6Hr1G021700.3 , HORVU6Hr1G021700.1 , HORVU5Hr1G019590.9 , HORVU5Hr1G019590.8 , HORVU5Hr1G019590.3 , HORVU5Hr1G019590.2 , HORVU5Hr1G019590.1 , HORVU5Hr1G019590.7 , HORVU5Hr1G019590.6 , HORVU5Hr1G019590.5 , HORVU5Hr1G019590.4 , HORVU7Hr1G103380.2 , HORVU0Hr1G025670.1 , HORVU0Hr1G025670.2 , HORVU0Hr1G025670.6 , HORVU0Hr1G025670.7 , HORVU7Hr1G103170.7 , HORVU7Hr1G103170.6 , HORVU7Hr1G103170.5 , HORVU7Hr1G103170.4 , HORVU7Hr1G103170.3 , HORVU7Hr1G103170.1 , HORVU7Hr1G103170.9 , HORVU7Hr1G103170.8 , HORVU6Hr1G026280.14 , HORVU6Hr1G026280.15 , HORVU6Hr1G026280.16 , HORVU6Hr1G026280.10 , HORVU6Hr1G026280.11 , HORVU6Hr1G026280.12 , HORVU6Hr1G026280.13 , HORVU6Hr1G026200.21 , HORVU6Hr1G026200.22 , HORVU2Hr1G104440.6 , HORVU0Hr1G038500.1 , HORVU0Hr1G038500.2 , HORVU0Hr1G038500.3 , HORVU7Hr1G103380.1 , HORVU2Hr1G048820.1 , HORVU7Hr1G103170.22 , HORVU7Hr1G103170.20 , HORVU7Hr1G103170.21 , HORVU6Hr1G014910.1 , HORVU2Hr1G048830.1 , HORVU6Hr1G014970.1 , HORVU6Hr1G014970.3 , HORVU6Hr1G014970.2 , HORVU6Hr1G014970.5 , HORVU6Hr1G014970.4 , HORVU6Hr1G014970.7 , HORVU6Hr1G014970.6 , HORVU6Hr1G014970.8
Wheat TraesCS7D02G443100 , TraesCS7A02G453300 , TraesCS7D02G474300 , TraesCS6A02G136700 , TraesCS4D02G006900 , TraesCS6B02G148000 , TraesCS7A02G466500 , TraesCS2A02G408500 , TraesCS1D02G314000 , TraesCS1D02G314000 , TraesCS1D02G314000 , TraesCS2D02G405500 , TraesCS5D02G087500 , TraesCS6A02G087800 , TraesCS7B02G366700 , TraesCSU02G018500 , TraesCS6A02G266000 , TraesCS5B02G080200 , TraesCS7B02G366600 , TraesCS7D02G474200 , TraesCS7B02G354000 , TraesCS7B02G354000 , TraesCS6A02G087100 , TraesCS6B02G164700 , TraesCS6B02G164700 , TraesCS4B02G387300 , TraesCS7B02G354200 , TraesCS7B02G354100 , TraesCS4B02G008400 , TraesCS6B02G110300 , TraesCS7A02G453600 , TraesCS6A02G112400 , TraesCS5D02G269800 , TraesCS6B02G140600 , TraesCS6D02G248600 , TraesCS7A02G453500 , TraesCSU02G019400 , TraesCS5A02G073800 , TraesCS6D02G125600 , TraesCS7D02G453100 , TraesCS7A02G453400 , TraesCS5B02G260700 , TraesCS4A02G306500 , TraesCS7A02G487500 , TraesCS1A02G313500 , TraesCS1A02G313500 , TraesCS1A02G313500 , TraesCS1A02G313500
Populus PNT59589 , PNT59588 , PNT28507 , PNT28506 , PNS95081 , PNS95080 , PNS95078 , PNS95079 , PNS95075 , PNS95076 , PNS95077 , PNT13284 , PNT13285 , PNT13286 , PNT13287 , PNT13281 , PNT13282 , PNT13283 , PNT13288 , PNT13289 , PNT13292 , PNT13291 , PNT13290 , PNT59598 , PNT59599 , PNT59596 , PNT59597 , PNT59594 , PNT59595 , PNT59592 , PNT59593 , PNT59590 , PNT59591 , PNT59600


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cDNA sequences
Sobic.004G273300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G425600 "similar to 17.4 kDa class I heat shock protein 3, maped into a unique stay green QTL (QSTG11_1) involved in drought tolerance."(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@similar to 17.4 kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
2 Sobic.001G425500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
3 Sobic.004G109700 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.001G481300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
5 Sobic.004G109600 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.001G201200 - -
7 Sobic.002G284000 pyridoxal-dependent decarboxylase protein, putative, expressed K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase
8 Sobic.001G279350 - -
9 Sobic.009G194400 expressed protein -
10 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G323201 - -
12 Sobic.002G100832 - -
13 Sobic.010G196600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.004G109800 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.006G207000 expressed protein -
16 Sobic.007G147700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
17 Sobic.009G243200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
18 Sobic.001G426000 Up-reguralion under heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
19 Sobic.007G006300 expressed protein -
20 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase


Gene co-expression network
sample Sobic004G273300 Sobic004G273300 Sobic001G425600 Sobic001G425600 Sobic004G273300--Sobic001G425600 Sobic001G425500 Sobic001G425500 Sobic004G273300--Sobic001G425500 Sobic004G109700 Sobic004G109700 Sobic004G273300--Sobic004G109700 Sobic001G481300 Sobic001G481300 Sobic004G273300--Sobic001G481300 Sobic004G109600 Sobic004G109600 Sobic004G273300--Sobic004G109600 Sobic001G201200 Sobic001G201200 Sobic004G273300--Sobic001G201200 Sobic002G284000 Sobic002G284000 Sobic004G273300--Sobic002G284000 Sobic001G279350 Sobic001G279350 Sobic004G273300--Sobic001G279350 Sobic009G194400 Sobic009G194400 Sobic004G273300--Sobic009G194400 Sobic001G425600--Sobic001G425500 Sobic001G425600--Sobic004G109700 Sobic001G425600--Sobic004G273300 Sobic001G425600--Sobic009G194400 Sobic001G425600--Sobic004G109600 Sobic001G425600--Sobic001G481300 Sobic010G196600 Sobic010G196600 Sobic001G425600--Sobic010G196600 Sobic001G425600--Sobic001G279350 Sobic003G323201 Sobic003G323201 Sobic001G425600--Sobic003G323201 Sobic001G425500--Sobic001G425600 Sobic001G425500--Sobic004G109700 Sobic001G425500--Sobic009G194400 Sobic001G425500--Sobic010G196600 Sobic001G425500--Sobic004G273300 Sobic001G425500--Sobic003G323201 Sobic004G092800 Sobic004G092800 Sobic001G425500--Sobic004G092800 Sobic001G425500--Sobic004G109600 Sobic001G425500--Sobic001G481300 Sobic004G109700--Sobic004G109600 Sobic004G109700--Sobic001G425600 Sobic004G109700--Sobic001G425500 Sobic004G109700--Sobic001G481300 Sobic004G109700--Sobic010G196600 Sobic004G109700--Sobic009G194400 Sobic004G109700--Sobic003G323201 Sobic007G214600 Sobic007G214600 Sobic004G109700--Sobic007G214600 Sobic004G109700--Sobic001G279350 Sobic003G355100 Sobic003G355100 Sobic001G481300--Sobic003G355100 Sobic001G481300--Sobic004G109600 Sobic003G197200 Sobic003G197200 Sobic001G481300--Sobic003G197200 Sobic001G481300--Sobic007G214600 Sobic001G481300--Sobic001G279350 Sobic001G481300--Sobic004G109700 Sobic003G148600 Sobic003G148600 Sobic001G481300--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic001G481300--Sobic001G371800 Sobic010G198500 Sobic010G198500 Sobic001G481300--Sobic010G198500 Sobic004G109600--Sobic001G481300 Sobic004G109600--Sobic003G355100 Sobic004G109600--Sobic007G214600 Sobic004G109600--Sobic004G109700 Sobic004G109600--Sobic003G197200 Sobic004G109600--Sobic010G198500 Sobic004G109600--Sobic003G148600 Sobic004G109600--Sobic001G371800 Sobic004G109600--Sobic001G201200 Sobic001G443800 Sobic001G443800 Sobic001G201200--Sobic001G443800 Sobic001G201200--Sobic001G371800 Sobic001G201200--Sobic003G197200 Sobic001G201200--Sobic010G198500 Sobic001G076100 Sobic001G076100 Sobic001G201200--Sobic001G076100 Sobic001G201200--Sobic007G214600 Sobic001G107800 Sobic001G107800 Sobic001G201200--Sobic001G107800 Sobic001G201200--Sobic003G148600 Sobic007G147700 Sobic007G147700 Sobic001G201200--Sobic007G147700 Sobic002G284000--Sobic001G201200 Sobic002G284000--Sobic007G147700 Sobic007G006300 Sobic007G006300 Sobic002G284000--Sobic007G006300 Sobic002G284000--Sobic001G279350 Sobic002G284000--Sobic001G076100 Sobic002G284000--Sobic001G481300 Sobic005G086400 Sobic005G086400 Sobic002G284000--Sobic005G086400 Sobic002G284000--Sobic004G109600 Sobic002G284000--Sobic001G371800 Sobic001G279350--Sobic001G481300 Sobic001G279350--Sobic004G109600 Sobic001G279350--Sobic007G147700 Sobic001G279350--Sobic003G355100 Sobic001G279350--Sobic001G425600 Sobic001G279350--Sobic004G109700 Sobic001G279350--Sobic003G197200 Sobic001G279350--Sobic001G425500 Sobic001G279350--Sobic007G214600 Sobic009G194400--Sobic010G196600 Sobic009G194400--Sobic001G425500 Sobic009G194400--Sobic003G323201 Sobic009G194400--Sobic001G425600 Sobic003G370600 Sobic003G370600 Sobic009G194400--Sobic003G370600 Sobic009G194400--Sobic004G109700 Sobic004G097100 Sobic004G097100 Sobic009G194400--Sobic004G097100 Sobic002G388900 Sobic002G388900 Sobic009G194400--Sobic002G388900 Sobic009G194400--Sobic004G092800
Octagon: transcription factors


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