Gene annotation
Transcriptome id Sobic.004G109800.1
Synonym Sb04g008980
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A194YP00
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF146
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G15975 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g15060.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ95818 , KQJ94241 , KQJ95808
Barley HORVU5Hr1G074300.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G316100 G-patch domain containing protein, putative, expressed K13103: tuftelin-interacting protein 11
2 Sobic.005G086400 hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
3 Sobic.002G284000 pyridoxal-dependent decarboxylase protein, putative, expressed K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase
4 Sobic.001G201200 - -
5 Sobic.004G088300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBK4 - F-box domain and kelch repeat containing protein, expressed -
6 Sobic.003G284200 expressed protein -
7 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.004G273300 ubiquitin family protein, putative, expressed K08770: ubiquitin C
9 Sobic.003G018300 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
11 Sobic.001G077600 expressed protein -
12 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
13 Sobic.001G371800 expressed protein -
14 Sobic.004G199300 hypoxia-responsive family protein, putative, expressed -
15 Sobic.009G123400 - -
16 Sobic.001G425600 "similar to 17.4 kDa class I heat shock protein 3, maped into a unique stay green QTL (QSTG11_1) involved in drought tolerance."(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@similar to 17.4 kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
17 Sobic.006G230600 expressed protein -
18 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.004G340200 dehydrogenase, putative, expressed K09753: cinnamoyl-CoA reductase
20 Sobic.007G147700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -


Gene co-expression network
sample Sobic004G109800 Sobic004G109800 Sobic003G316100 Sobic003G316100 Sobic004G109800--Sobic003G316100 Sobic005G086400 Sobic005G086400 Sobic004G109800--Sobic005G086400 Sobic002G284000 Sobic002G284000 Sobic004G109800--Sobic002G284000 Sobic001G201200 Sobic001G201200 Sobic004G109800--Sobic001G201200 Sobic004G088300 Sobic004G088300 Sobic004G109800--Sobic004G088300 Sobic003G284200 Sobic003G284200 Sobic004G109800--Sobic003G284200 Sobic001G076100 Sobic001G076100 Sobic004G109800--Sobic001G076100 Sobic004G273300 Sobic004G273300 Sobic004G109800--Sobic004G273300 Sobic003G018300 Sobic003G018300 Sobic004G109800--Sobic003G018300 Sobic003G316100--Sobic004G109800 Sobic003G316100--Sobic002G284000 Sobic007G110900 Sobic007G110900 Sobic003G316100--Sobic007G110900 Sobic003G316100--Sobic004G273300 Sobic003G316100--Sobic001G201200 Sobic003G316100--Sobic005G086400 Sobic003G316100--Sobic001G076100 Sobic003G316100--Sobic003G284200 Sobic001G425600 Sobic001G425600 Sobic003G316100--Sobic001G425600 Sobic005G086400--Sobic001G076100 Sobic005G086400--Sobic002G284000 Sobic005G086400--Sobic001G201200 Sobic003G123600 Sobic003G123600 Sobic005G086400--Sobic003G123600 Sobic001G107800 Sobic001G107800 Sobic005G086400--Sobic001G107800 Sobic001G371800 Sobic001G371800 Sobic005G086400--Sobic001G371800 Sobic005G086400--Sobic004G109800 Sobic005G086400--Sobic004G088300 Sobic001G443800 Sobic001G443800 Sobic005G086400--Sobic001G443800 Sobic002G284000--Sobic001G201200 Sobic007G147700 Sobic007G147700 Sobic002G284000--Sobic007G147700 Sobic007G006300 Sobic007G006300 Sobic002G284000--Sobic007G006300 Sobic001G279350 Sobic001G279350 Sobic002G284000--Sobic001G279350 Sobic002G284000--Sobic001G076100 Sobic001G481300 Sobic001G481300 Sobic002G284000--Sobic001G481300 Sobic002G284000--Sobic005G086400 Sobic004G109600 Sobic004G109600 Sobic002G284000--Sobic004G109600 Sobic002G284000--Sobic001G371800 Sobic001G201200--Sobic001G443800 Sobic001G201200--Sobic001G371800 Sobic003G197200 Sobic003G197200 Sobic001G201200--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic001G201200--Sobic010G198500 Sobic001G201200--Sobic001G076100 Sobic007G214600 Sobic007G214600 Sobic001G201200--Sobic007G214600 Sobic001G201200--Sobic001G107800 Sobic003G148600 Sobic003G148600 Sobic001G201200--Sobic003G148600 Sobic001G201200--Sobic007G147700 Sobic002G389000 Sobic002G389000 Sobic004G088300--Sobic002G389000 Sobic004G088300--Sobic001G076100 Sobic006G230600 Sobic006G230600 Sobic004G088300--Sobic006G230600 Sobic007G214400 Sobic007G214400 Sobic004G088300--Sobic007G214400 Sobic004G088300--Sobic001G371800 Sobic004G088300--Sobic001G107800 Sobic006G230800 Sobic006G230800 Sobic004G088300--Sobic006G230800 Sobic010G031100 Sobic010G031100 Sobic004G088300--Sobic010G031100 Sobic004G088300--Sobic001G443800 Sobic003G284200--Sobic006G230600 Sobic003G284200--Sobic001G076100 Sobic001G077600 Sobic001G077600 Sobic003G284200--Sobic001G077600 Sobic003G284200--Sobic004G088300 Sobic003G284200--Sobic001G201200 Sobic003G284200--Sobic004G109800 Sobic003G284200--Sobic001G443800 Sobic003G284200--Sobic002G389000 Sobic003G284200--Sobic001G371800 Sobic001G076100--Sobic001G201200 Sobic001G076100--Sobic001G443800 Sobic001G076100--Sobic003G123600 Sobic001G076100--Sobic001G371800 Sobic001G076100--Sobic001G107800 Sobic001G076100--Sobic002G389000 Sobic001G076100--Sobic003G148600 Sobic001G076100--Sobic003G197200 Sobic001G076100--Sobic006G230600 Sobic004G273300--Sobic001G425600 Sobic001G425500 Sobic001G425500 Sobic004G273300--Sobic001G425500 Sobic004G109700 Sobic004G109700 Sobic004G273300--Sobic004G109700 Sobic004G273300--Sobic001G481300 Sobic004G273300--Sobic004G109600 Sobic004G273300--Sobic001G201200 Sobic004G273300--Sobic002G284000 Sobic004G273300--Sobic001G279350 Sobic009G194400 Sobic009G194400 Sobic004G273300--Sobic009G194400 Sobic003G018300--Sobic002G389000 Sobic003G018300--Sobic004G088300 Sobic008G036200 Sobic008G036200 Sobic003G018300--Sobic008G036200 Sobic003G018300--Sobic007G214400 Sobic003G018300--Sobic006G230600 Sobic003G018300--Sobic001G076100 Sobic003G018300--Sobic001G107800 Sobic001G254100 Sobic001G254100 Sobic003G018300--Sobic001G254100 Sobic003G018300--Sobic001G201200
Octagon: transcription factors


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