Gene annotation
Transcriptome id Sobic.005G086400.1
Synonym ATHSP22.0, Sb05g007030
Functional annotation hsp20/alpha crystallin family protein, putative, expressed
UniProt C5Y7T5
Pfam PF00011
Panther DB PTHR11527 PTHR11527:SF170
NCBI CDD KOG0710; Molecular chaperone (small heat-shock protein Hsp26/Hsp42)
KEGG Orthology K13993; HSP20 family protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G10250 : HSP20-like chaperones superfamily protein
RAP-DB (Rice) LOC_Os11g13980.1 : hsp20/alpha crystallin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a015590
Brachypodium -
Barley HORVU4Hr1G015170.1
Wheat TraesCS4A02G226700 , TraesCS4A02G226700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.002G284000 pyridoxal-dependent decarboxylase protein, putative, expressed K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase
3 Sobic.001G201200 - -
4 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G371800 expressed protein -
7 Sobic.004G109800 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.004G088300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBK4 - F-box domain and kelch repeat containing protein, expressed -
9 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
10 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
11 Sobic.006G230600 expressed protein -
12 Sobic.004G199300 hypoxia-responsive family protein, putative, expressed -
13 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
14 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
15 Sobic.008G118700 respiratory burst oxidase, putative, expressed -
16 Sobic.009G123400 - -
17 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
18 Sobic.007G214400 EF hand family protein, putative, expressed -
19 Sobic.006G190500 expressed protein -
20 Sobic.004G166200 expressed protein -


Gene co-expression network
sample Sobic005G086400 Sobic005G086400 Sobic001G076100 Sobic001G076100 Sobic005G086400--Sobic001G076100 Sobic002G284000 Sobic002G284000 Sobic005G086400--Sobic002G284000 Sobic001G201200 Sobic001G201200 Sobic005G086400--Sobic001G201200 Sobic003G123600 Sobic003G123600 Sobic005G086400--Sobic003G123600 Sobic001G107800 Sobic001G107800 Sobic005G086400--Sobic001G107800 Sobic001G371800 Sobic001G371800 Sobic005G086400--Sobic001G371800 Sobic004G109800 Sobic004G109800 Sobic005G086400--Sobic004G109800 Sobic004G088300 Sobic004G088300 Sobic005G086400--Sobic004G088300 Sobic001G443800 Sobic001G443800 Sobic005G086400--Sobic001G443800 Sobic001G076100--Sobic001G201200 Sobic001G076100--Sobic001G443800 Sobic001G076100--Sobic003G123600 Sobic001G076100--Sobic001G371800 Sobic001G076100--Sobic001G107800 Sobic002G389000 Sobic002G389000 Sobic001G076100--Sobic002G389000 Sobic003G148600 Sobic003G148600 Sobic001G076100--Sobic003G148600 Sobic003G197200 Sobic003G197200 Sobic001G076100--Sobic003G197200 Sobic006G230600 Sobic006G230600 Sobic001G076100--Sobic006G230600 Sobic002G284000--Sobic001G201200 Sobic007G147700 Sobic007G147700 Sobic002G284000--Sobic007G147700 Sobic007G006300 Sobic007G006300 Sobic002G284000--Sobic007G006300 Sobic001G279350 Sobic001G279350 Sobic002G284000--Sobic001G279350 Sobic002G284000--Sobic001G076100 Sobic001G481300 Sobic001G481300 Sobic002G284000--Sobic001G481300 Sobic002G284000--Sobic005G086400 Sobic004G109600 Sobic004G109600 Sobic002G284000--Sobic004G109600 Sobic002G284000--Sobic001G371800 Sobic001G201200--Sobic001G443800 Sobic001G201200--Sobic001G371800 Sobic001G201200--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic001G201200--Sobic010G198500 Sobic001G201200--Sobic001G076100 Sobic007G214600 Sobic007G214600 Sobic001G201200--Sobic007G214600 Sobic001G201200--Sobic001G107800 Sobic001G201200--Sobic003G148600 Sobic001G201200--Sobic007G147700 Sobic003G123600--Sobic003G148600 Sobic003G123600--Sobic001G107800 Sobic002G415600 Sobic002G415600 Sobic003G123600--Sobic002G415600 Sobic003G123600--Sobic003G197200 Sobic003G144700 Sobic003G144700 Sobic003G123600--Sobic003G144700 Sobic003G123600--Sobic001G076100 Sobic006G230800 Sobic006G230800 Sobic003G123600--Sobic006G230800 Sobic006G190500 Sobic006G190500 Sobic003G123600--Sobic006G190500 Sobic003G123600--Sobic001G443800 Sobic001G107800--Sobic003G123600 Sobic003G394400 Sobic003G394400 Sobic001G107800--Sobic003G394400 Sobic007G214400 Sobic007G214400 Sobic001G107800--Sobic007G214400 Sobic001G107800--Sobic003G148600 Sobic002G261200 Sobic002G261200 Sobic001G107800--Sobic002G261200 Sobic001G107800--Sobic001G371800 Sobic001G254100 Sobic001G254100 Sobic001G107800--Sobic001G254100 Sobic001G107800--Sobic003G197200 Sobic002G068600 Sobic002G068600 Sobic001G107800--Sobic002G068600 Sobic001G371800--Sobic007G214400 Sobic001G371800--Sobic003G394400 Sobic001G371800--Sobic001G201200 Sobic001G371800--Sobic002G389000 Sobic004G166200 Sobic004G166200 Sobic001G371800--Sobic004G166200 Sobic001G371800--Sobic001G107800 Sobic001G371800--Sobic007G214600 Sobic001G371800--Sobic003G197200 Sobic001G371800--Sobic003G148600 Sobic003G316100 Sobic003G316100 Sobic004G109800--Sobic003G316100 Sobic004G109800--Sobic005G086400 Sobic004G109800--Sobic002G284000 Sobic004G109800--Sobic001G201200 Sobic004G109800--Sobic004G088300 Sobic003G284200 Sobic003G284200 Sobic004G109800--Sobic003G284200 Sobic004G109800--Sobic001G076100 Sobic004G273300 Sobic004G273300 Sobic004G109800--Sobic004G273300 Sobic003G018300 Sobic003G018300 Sobic004G109800--Sobic003G018300 Sobic004G088300--Sobic002G389000 Sobic004G088300--Sobic001G076100 Sobic004G088300--Sobic006G230600 Sobic004G088300--Sobic007G214400 Sobic004G088300--Sobic001G371800 Sobic004G088300--Sobic001G107800 Sobic004G088300--Sobic006G230800 Sobic010G031100 Sobic010G031100 Sobic004G088300--Sobic010G031100 Sobic004G088300--Sobic001G443800 Sobic001G443800--Sobic003G197200 Sobic001G443800--Sobic001G201200 Sobic001G443800--Sobic001G076100 Sobic001G443800--Sobic003G148600 Sobic001G443800--Sobic001G371800 Sobic001G443800--Sobic010G198500 Sobic001G443800--Sobic003G123600 Sobic001G443800--Sobic007G214600 Sobic006G190100 Sobic006G190100 Sobic001G443800--Sobic006G190100
Octagon: transcription factors


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