Gene annotation
Transcriptome id Sobic.004G199300.1
Synonym Sb04g024580
Functional annotation hypoxia-responsive family protein, putative, expressed
UniProt C5XWG4
Pfam PF04588
Panther DB PTHR28018 PTHR28018:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05550 : Hypoxia-responsive family protein
RAP-DB (Rice) LOC_Os02g37930.1 : hypoxia-responsive family protein, putative, expressed
MaizeGDB (Corn) Zm00025a021342 , Zm00025a031811
Brachypodium KQK00134
Barley HORVU2Hr1G102130.4 , HORVU2Hr1G102130.7 , HORVU2Hr1G102130.6 , HORVU2Hr1G102130.1
Wheat -
Populus -


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cDNA sequences
Sobic.004G199300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G234700 expressed protein -
2 Sobic.002G415600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed K09286: EREBP-like factor
3 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
5 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
6 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
8 Sobic.005G086400 hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
9 Sobic.004G088300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBK4 - F-box domain and kelch repeat containing protein, expressed -
10 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.006G190500 expressed protein -
12 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
13 Sobic.003G327500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
14 Sobic.001G101500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endoplasmic oxidoreductin-1 precursor, putative, expressed K10950: ERO1-like protein alpha
15 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.010G220200 haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed -
17 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
18 Sobic.001G426000 Up-reguralion under heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
19 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
20 Sobic.001G201200 - -


Gene co-expression network
sample Sobic004G199300 Sobic004G199300 Sobic010G234700 Sobic010G234700 Sobic004G199300--Sobic010G234700 Sobic002G415600 Sobic002G415600 Sobic004G199300--Sobic002G415600 Sobic003G123600 Sobic003G123600 Sobic004G199300--Sobic003G123600 Sobic010G234600 Sobic010G234600 Sobic004G199300--Sobic010G234600 Sobic006G230800 Sobic006G230800 Sobic004G199300--Sobic006G230800 Sobic001G107800 Sobic001G107800 Sobic004G199300--Sobic001G107800 Sobic009G169000 Sobic009G169000 Sobic004G199300--Sobic009G169000 Sobic005G086400 Sobic005G086400 Sobic004G199300--Sobic005G086400 Sobic004G088300 Sobic004G088300 Sobic004G199300--Sobic004G088300 Sobic010G234700--Sobic010G234600 Sobic010G234700--Sobic002G415600 Sobic010G234700--Sobic004G199300 Sobic001G077700 Sobic001G077700 Sobic010G234700--Sobic001G077700 Sobic010G217800 Sobic010G217800 Sobic010G234700--Sobic010G217800 Sobic006G230900 Sobic006G230900 Sobic010G234700--Sobic006G230900 Sobic008G177800 Sobic008G177800 Sobic010G234700--Sobic008G177800 Sobic010G234700--Sobic003G123600 Sobic006G190500 Sobic006G190500 Sobic010G234700--Sobic006G190500 Sobic002G415600--Sobic010G217800 Sobic002G415600--Sobic003G123600 Sobic002G415600--Sobic006G230900 Sobic003G144700 Sobic003G144700 Sobic002G415600--Sobic003G144700 Sobic002G415600--Sobic010G234700 Sobic002G415600--Sobic006G190500 Sobic006G231100 Sobic006G231100 Sobic002G415600--Sobic006G231100 Sobic002G415600--Sobic008G177800 Sobic002G415600--Sobic010G234600 Sobic003G148600 Sobic003G148600 Sobic003G123600--Sobic003G148600 Sobic003G123600--Sobic001G107800 Sobic003G123600--Sobic002G415600 Sobic003G197200 Sobic003G197200 Sobic003G123600--Sobic003G197200 Sobic003G123600--Sobic003G144700 Sobic001G076100 Sobic001G076100 Sobic003G123600--Sobic001G076100 Sobic003G123600--Sobic006G230800 Sobic003G123600--Sobic006G190500 Sobic001G443800 Sobic001G443800 Sobic003G123600--Sobic001G443800 Sobic010G234600--Sobic010G234700 Sobic010G234600--Sobic008G177800 Sobic010G234600--Sobic001G077700 Sobic010G234600--Sobic006G231100 Sobic002G294700 Sobic002G294700 Sobic010G234600--Sobic002G294700 Sobic010G234600--Sobic002G415600 Sobic006G231332 Sobic006G231332 Sobic010G234600--Sobic006G231332 Sobic009G071800 Sobic009G071800 Sobic010G234600--Sobic009G071800 Sobic002G248100 Sobic002G248100 Sobic010G234600--Sobic002G248100 Sobic006G230800--Sobic006G190500 Sobic006G230800--Sobic003G123600 Sobic010G031100 Sobic010G031100 Sobic006G230800--Sobic010G031100 Sobic006G230800--Sobic001G107800 Sobic002G261200 Sobic002G261200 Sobic006G230800--Sobic002G261200 Sobic006G230800--Sobic002G415600 Sobic006G230600 Sobic006G230600 Sobic006G230800--Sobic006G230600 Sobic009G111200 Sobic009G111200 Sobic006G230800--Sobic009G111200 Sobic010G032100 Sobic010G032100 Sobic006G230800--Sobic010G032100 Sobic001G107800--Sobic003G123600 Sobic003G394400 Sobic003G394400 Sobic001G107800--Sobic003G394400 Sobic007G214400 Sobic007G214400 Sobic001G107800--Sobic007G214400 Sobic001G107800--Sobic003G148600 Sobic001G107800--Sobic002G261200 Sobic001G371800 Sobic001G371800 Sobic001G107800--Sobic001G371800 Sobic001G254100 Sobic001G254100 Sobic001G107800--Sobic001G254100 Sobic001G107800--Sobic003G197200 Sobic002G068600 Sobic002G068600 Sobic001G107800--Sobic002G068600 Sobic001G320900 Sobic001G320900 Sobic009G169000--Sobic001G320900 Sobic009G169000--Sobic003G144700 Sobic004G280200 Sobic004G280200 Sobic009G169000--Sobic004G280200 Sobic009G169000--Sobic003G197200 Sobic003G355100 Sobic003G355100 Sobic009G169000--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic009G169000--Sobic007G214600 Sobic009G169000--Sobic003G148600 Sobic009G169000--Sobic001G107800 Sobic007G026600 Sobic007G026600 Sobic009G169000--Sobic007G026600 Sobic005G086400--Sobic001G076100 Sobic002G284000 Sobic002G284000 Sobic005G086400--Sobic002G284000 Sobic001G201200 Sobic001G201200 Sobic005G086400--Sobic001G201200 Sobic005G086400--Sobic003G123600 Sobic005G086400--Sobic001G107800 Sobic005G086400--Sobic001G371800 Sobic004G109800 Sobic004G109800 Sobic005G086400--Sobic004G109800 Sobic005G086400--Sobic004G088300 Sobic005G086400--Sobic001G443800 Sobic002G389000 Sobic002G389000 Sobic004G088300--Sobic002G389000 Sobic004G088300--Sobic001G076100 Sobic004G088300--Sobic006G230600 Sobic004G088300--Sobic007G214400 Sobic004G088300--Sobic001G371800 Sobic004G088300--Sobic001G107800 Sobic004G088300--Sobic006G230800 Sobic004G088300--Sobic010G031100 Sobic004G088300--Sobic001G443800
Octagon: transcription factors


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