Gene annotation
Transcriptome id Sobic.003G327500.1
Synonym AGR1, PIN2, AGR, Sb03g037350, EIR1, ATPIN2, SbPIN4, efflux carriers pin-formed, WAV6
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments" (PubMedID : 20528920)
auxin efflux carrier component, putative, expressed
UniProt C5XMI2
Pfam PF03547
Panther DB PTHR31752 PTHR31752:SF9
NCBI CDD -
KEGG Orthology K13947; auxin efflux carrier family protein
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G57090 : Auxin efflux carrier family protein
RAP-DB (Rice) LOC_Os01g58860.1 : auxin efflux carrier component, putative, expressed
MaizeGDB (Corn) Zm00025a027176 , Zm00025a025445 , Zm00025a015260
Brachypodium KQK10201 , PNT73045
Barley HORVU3Hr1G078620.2 , HORVU3Hr1G078620.1
Wheat TraesCS3D02G324800 , TraesCS7B02G359200 , TraesCS3A02G331300 , TraesCS7B02G331500 , TraesCS7B02G359300 , TraesCS3B02G361500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
2 Sobic.010G031100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
3 Sobic.006G190500 expressed protein -
4 Sobic.004G199300 hypoxia-responsive family protein, putative, expressed -
5 Sobic.001G436800 expressed protein -
6 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.006G230700 wound induced protein, putative, expressed -
9 Sobic.002G415600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed K09286: EREBP-like factor
10 Sobic.009G123400 - -
11 Sobic.004G088300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBK4 - F-box domain and kelch repeat containing protein, expressed -
12 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
13 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
14 Sobic.002G090600 OsFBX397 - F-box domain containing protein, expressed -
15 Sobic.009G111200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.009G035700 OsMADS89 - MADS-box family gene with M-gamma type-box, expressed -
17 Sobic.002G261200 expressed protein -
18 Sobic.001G309600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -
19 Sobic.006G230600 expressed protein -
20 Sobic.010G220200 haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed -


Gene co-expression network
sample Sobic003G327500 Sobic003G327500 Sobic006G230800 Sobic006G230800 Sobic003G327500--Sobic006G230800 Sobic010G031100 Sobic010G031100 Sobic003G327500--Sobic010G031100 Sobic006G190500 Sobic006G190500 Sobic003G327500--Sobic006G190500 Sobic004G199300 Sobic004G199300 Sobic003G327500--Sobic004G199300 Sobic001G436800 Sobic001G436800 Sobic003G327500--Sobic001G436800 Sobic001G107800 Sobic001G107800 Sobic003G327500--Sobic001G107800 Sobic003G123600 Sobic003G123600 Sobic003G327500--Sobic003G123600 Sobic006G230700 Sobic006G230700 Sobic003G327500--Sobic006G230700 Sobic002G415600 Sobic002G415600 Sobic003G327500--Sobic002G415600 Sobic006G230800--Sobic006G190500 Sobic006G230800--Sobic003G123600 Sobic006G230800--Sobic010G031100 Sobic006G230800--Sobic001G107800 Sobic002G261200 Sobic002G261200 Sobic006G230800--Sobic002G261200 Sobic006G230800--Sobic002G415600 Sobic006G230600 Sobic006G230600 Sobic006G230800--Sobic006G230600 Sobic009G111200 Sobic009G111200 Sobic006G230800--Sobic009G111200 Sobic010G032100 Sobic010G032100 Sobic006G230800--Sobic010G032100 Sobic010G031100--Sobic010G032100 Sobic010G031100--Sobic006G230800 Sobic001G149800 Sobic001G149800 Sobic010G031100--Sobic001G149800 Sobic002G215300 Sobic002G215300 Sobic010G031100--Sobic002G215300 Sobic006G032700 Sobic006G032700 Sobic010G031100--Sobic006G032700 Sobic010G031100--Sobic006G230600 Sobic010G031100--Sobic002G261200 Sobic003G138300 Sobic003G138300 Sobic010G031100--Sobic003G138300 Sobic001G254100 Sobic001G254100 Sobic010G031100--Sobic001G254100 Sobic006G190500--Sobic006G230800 Sobic006G190500--Sobic003G123600 Sobic006G190100 Sobic006G190100 Sobic006G190500--Sobic006G190100 Sobic006G190500--Sobic002G415600 Sobic006G230900 Sobic006G230900 Sobic006G190500--Sobic006G230900 Sobic006G190500--Sobic009G111200 Sobic010G217800 Sobic010G217800 Sobic006G190500--Sobic010G217800 Sobic003G144700 Sobic003G144700 Sobic006G190500--Sobic003G144700 Sobic010G220200 Sobic010G220200 Sobic006G190500--Sobic010G220200 Sobic010G234700 Sobic010G234700 Sobic004G199300--Sobic010G234700 Sobic004G199300--Sobic002G415600 Sobic004G199300--Sobic003G123600 Sobic010G234600 Sobic010G234600 Sobic004G199300--Sobic010G234600 Sobic004G199300--Sobic006G230800 Sobic004G199300--Sobic001G107800 Sobic009G169000 Sobic009G169000 Sobic004G199300--Sobic009G169000 Sobic005G086400 Sobic005G086400 Sobic004G199300--Sobic005G086400 Sobic004G088300 Sobic004G088300 Sobic004G199300--Sobic004G088300 Sobic001G436800--Sobic010G031100 Sobic002G090600 Sobic002G090600 Sobic001G436800--Sobic002G090600 Sobic005G215601 Sobic005G215601 Sobic001G436800--Sobic005G215601 Sobic004G210700 Sobic004G210700 Sobic001G436800--Sobic004G210700 Sobic001G436800--Sobic006G230800 Sobic001G436800--Sobic003G327500 Sobic010G032000 Sobic010G032000 Sobic001G436800--Sobic010G032000 Sobic001G129700 Sobic001G129700 Sobic001G436800--Sobic001G129700 Sobic001G436800--Sobic006G032700 Sobic001G107800--Sobic003G123600 Sobic003G394400 Sobic003G394400 Sobic001G107800--Sobic003G394400 Sobic007G214400 Sobic007G214400 Sobic001G107800--Sobic007G214400 Sobic003G148600 Sobic003G148600 Sobic001G107800--Sobic003G148600 Sobic001G107800--Sobic002G261200 Sobic001G371800 Sobic001G371800 Sobic001G107800--Sobic001G371800 Sobic001G107800--Sobic001G254100 Sobic003G197200 Sobic003G197200 Sobic001G107800--Sobic003G197200 Sobic002G068600 Sobic002G068600 Sobic001G107800--Sobic002G068600 Sobic003G123600--Sobic003G148600 Sobic003G123600--Sobic001G107800 Sobic003G123600--Sobic002G415600 Sobic003G123600--Sobic003G197200 Sobic003G123600--Sobic003G144700 Sobic001G076100 Sobic001G076100 Sobic003G123600--Sobic001G076100 Sobic003G123600--Sobic006G230800 Sobic003G123600--Sobic006G190500 Sobic001G443800 Sobic001G443800 Sobic003G123600--Sobic001G443800 Sobic006G230700--Sobic006G230800 Sobic006G230700--Sobic006G190500 Sobic003G145400 Sobic003G145400 Sobic006G230700--Sobic003G145400 Sobic006G230700--Sobic009G111200 Sobic006G230700--Sobic010G031100 Sobic006G230700--Sobic010G220200 Sobic001G525200 Sobic001G525200 Sobic006G230700--Sobic001G525200 Sobic005G010200 Sobic005G010200 Sobic006G230700--Sobic005G010200 Sobic009G077500 Sobic009G077500 Sobic006G230700--Sobic009G077500 Sobic002G415600--Sobic010G217800 Sobic002G415600--Sobic003G123600 Sobic002G415600--Sobic006G230900 Sobic002G415600--Sobic003G144700 Sobic002G415600--Sobic010G234700 Sobic002G415600--Sobic006G190500 Sobic006G231100 Sobic006G231100 Sobic002G415600--Sobic006G231100 Sobic008G177800 Sobic008G177800 Sobic002G415600--Sobic008G177800 Sobic002G415600--Sobic010G234600
Octagon: transcription factors


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