Gene annotation
Transcriptome id Sobic.009G035700.1
Synonym Sb09g003030
Functional annotation OsMADS89 - MADS-box family gene with M-gamma type-box, expressed
UniProt A0A1B6P6J1
Pfam PF00319
Panther DB PTHR11945 PTHR11945:SF172
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G05860 : MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os01g18440.1 : OsMADS89 - MADS-box family gene with M-gamma type-box, expressed
MaizeGDB (Corn) Zm00025a055342
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
2 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G327500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
4 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
5 Sobic.003G394400 ubiquitin family protein, putative, expressed -
6 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
7 Sobic.008G118700 respiratory burst oxidase, putative, expressed -
8 Sobic.002G215300 expressed protein -
9 Sobic.010G031100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
10 Sobic.007G214400 EF hand family protein, putative, expressed -
11 Sobic.009G148100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.003G018300 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.009G152600 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
14 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
15 Sobic.006G230600 expressed protein -
16 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.002G261200 expressed protein -
18 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
20 Sobic.006G046900 expressed protein -


Gene co-expression network
sample Sobic009G035700 Sobic009G035700 Sobic002G389000 Sobic002G389000 Sobic009G035700--Sobic002G389000 Sobic010G198600 Sobic010G198600 Sobic009G035700--Sobic010G198600 Sobic003G327500 Sobic003G327500 Sobic009G035700--Sobic003G327500 Sobic001G149800 Sobic001G149800 Sobic009G035700--Sobic001G149800 Sobic003G394400 Sobic003G394400 Sobic009G035700--Sobic003G394400 Sobic001G254100 Sobic001G254100 Sobic009G035700--Sobic001G254100 Sobic008G118700 Sobic008G118700 Sobic009G035700--Sobic008G118700 Sobic002G215300 Sobic002G215300 Sobic009G035700--Sobic002G215300 Sobic010G031100 Sobic010G031100 Sobic009G035700--Sobic010G031100 Sobic007G214400 Sobic007G214400 Sobic002G389000--Sobic007G214400 Sobic001G371800 Sobic001G371800 Sobic002G389000--Sobic001G371800 Sobic001G107800 Sobic001G107800 Sobic002G389000--Sobic001G107800 Sobic002G389000--Sobic003G394400 Sobic001G076100 Sobic001G076100 Sobic002G389000--Sobic001G076100 Sobic006G230600 Sobic006G230600 Sobic002G389000--Sobic006G230600 Sobic004G088300 Sobic004G088300 Sobic002G389000--Sobic004G088300 Sobic002G261200 Sobic002G261200 Sobic002G389000--Sobic002G261200 Sobic002G389000--Sobic001G254100 Sobic001G280800 Sobic001G280800 Sobic010G198600--Sobic001G280800 Sobic001G138600 Sobic001G138600 Sobic010G198600--Sobic001G138600 Sobic003G382800 Sobic003G382800 Sobic010G198600--Sobic003G382800 Sobic001G169500 Sobic001G169500 Sobic010G198600--Sobic001G169500 Sobic004G336500 Sobic004G336500 Sobic010G198600--Sobic004G336500 Sobic006G190100 Sobic006G190100 Sobic010G198600--Sobic006G190100 Sobic010G198600--Sobic002G261200 Sobic003G432700 Sobic003G432700 Sobic010G198600--Sobic003G432700 Sobic009G184000 Sobic009G184000 Sobic010G198600--Sobic009G184000 Sobic006G230800 Sobic006G230800 Sobic003G327500--Sobic006G230800 Sobic003G327500--Sobic010G031100 Sobic006G190500 Sobic006G190500 Sobic003G327500--Sobic006G190500 Sobic004G199300 Sobic004G199300 Sobic003G327500--Sobic004G199300 Sobic001G436800 Sobic001G436800 Sobic003G327500--Sobic001G436800 Sobic003G327500--Sobic001G107800 Sobic003G123600 Sobic003G123600 Sobic003G327500--Sobic003G123600 Sobic006G230700 Sobic006G230700 Sobic003G327500--Sobic006G230700 Sobic002G415600 Sobic002G415600 Sobic003G327500--Sobic002G415600 Sobic010G032100 Sobic010G032100 Sobic001G149800--Sobic010G032100 Sobic002G068600 Sobic002G068600 Sobic001G149800--Sobic002G068600 Sobic001G149800--Sobic010G031100 Sobic001G149800--Sobic003G394400 Sobic003G086600 Sobic003G086600 Sobic001G149800--Sobic003G086600 Sobic001G149800--Sobic001G254100 Sobic001G149800--Sobic001G107800 Sobic001G481500 Sobic001G481500 Sobic001G149800--Sobic001G481500 Sobic001G309600 Sobic001G309600 Sobic001G149800--Sobic001G309600 Sobic003G394400--Sobic002G068600 Sobic003G394400--Sobic007G214400 Sobic003G394400--Sobic003G086600 Sobic003G394400--Sobic001G371800 Sobic004G166200 Sobic004G166200 Sobic003G394400--Sobic004G166200 Sobic003G394400--Sobic001G107800 Sobic003G355100 Sobic003G355100 Sobic003G394400--Sobic003G355100 Sobic003G148600 Sobic003G148600 Sobic003G394400--Sobic003G148600 Sobic007G214600 Sobic007G214600 Sobic003G394400--Sobic007G214600 Sobic001G254100--Sobic002G068600 Sobic001G254100--Sobic001G107800 Sobic001G254100--Sobic003G394400 Sobic001G254100--Sobic002G261200 Sobic001G254100--Sobic004G166200 Sobic001G254100--Sobic001G149800 Sobic001G254100--Sobic007G214400 Sobic001G254100--Sobic002G389000 Sobic001G254100--Sobic003G086600 Sobic003G377100 Sobic003G377100 Sobic008G118700--Sobic003G377100 Sobic008G118700--Sobic002G068600 Sobic008G118700--Sobic001G107800 Sobic001G201200 Sobic001G201200 Sobic008G118700--Sobic001G201200 Sobic008G118700--Sobic001G254100 Sobic008G118700--Sobic001G149800 Sobic008G118700--Sobic001G371800 Sobic008G118700--Sobic003G148600 Sobic003G353300 Sobic003G353300 Sobic008G118700--Sobic003G353300 Sobic002G215300--Sobic010G031100 Sobic003G138300 Sobic003G138300 Sobic002G215300--Sobic003G138300 Sobic002G215300--Sobic001G309600 Sobic002G215300--Sobic001G149800 Sobic002G215300--Sobic010G032100 Sobic006G032700 Sobic006G032700 Sobic002G215300--Sobic006G032700 Sobic002G215300--Sobic001G481500 Sobic010G031300 Sobic010G031300 Sobic002G215300--Sobic010G031300 Sobic002G215300--Sobic003G394400 Sobic010G031100--Sobic010G032100 Sobic010G031100--Sobic006G230800 Sobic010G031100--Sobic001G149800 Sobic010G031100--Sobic002G215300 Sobic010G031100--Sobic006G032700 Sobic010G031100--Sobic006G230600 Sobic010G031100--Sobic002G261200 Sobic010G031100--Sobic003G138300 Sobic010G031100--Sobic001G254100
Octagon: transcription factors


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