Gene annotation
Transcriptome id Sobic.001G309600.1
Synonym NIP2, Sb01g030190
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
zinc finger, C3HC4 type, domain containing protein, expressed
UniProt C5WTI2
Pfam PF17123
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G17730 : NEP-interacting protein 2
RAP-DB (Rice) LOC_Os10g39770.1 : zinc finger, C3HC4 type, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003222
Brachypodium KQJ97657 , KQJ97656 , KQJ97655
Barley HORVU1Hr1G052700.3 , HORVU1Hr1G052700.4 , HORVU1Hr1G052700.9 , HORVU1Hr1G052700.8 , HORVU1Hr1G052700.2 , HORVU1Hr1G052700.1 , HORVU1Hr1G052700.7 , HORVU1Hr1G052700.5
Wheat TraesCS1D02G208400 , TraesCS1A02G205100 , TraesCS1B02G218700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
2 Sobic.001G481500 - -
3 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
4 Sobic.006G032700 rhodanese-like domain containing protein, putative, expressed -
5 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
6 Sobic.003G138300 expressed protein -
7 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
8 Sobic.002G215300 expressed protein -
9 Sobic.001G481600 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
10 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
11 Sobic.010G031300 auxin-induced protein 5NG4, putative, expressed -
12 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
13 Sobic.006G249300 expressed protein -
14 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
15 Sobic.005G103500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed -
16 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
17 Sobic.003G394400 ubiquitin family protein, putative, expressed -
18 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
19 Sobic.010G031100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
20 Sobic.007G015600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@- -


Gene co-expression network
sample Sobic001G309600 Sobic001G309600 Sobic001G397200 Sobic001G397200 Sobic001G309600--Sobic001G397200 Sobic001G481500 Sobic001G481500 Sobic001G309600--Sobic001G481500 Sobic010G032100 Sobic010G032100 Sobic001G309600--Sobic010G032100 Sobic006G032700 Sobic006G032700 Sobic001G309600--Sobic006G032700 Sobic001G149800 Sobic001G149800 Sobic001G309600--Sobic001G149800 Sobic003G138300 Sobic003G138300 Sobic001G309600--Sobic003G138300 Sobic003G086600 Sobic003G086600 Sobic001G309600--Sobic003G086600 Sobic002G215300 Sobic002G215300 Sobic001G309600--Sobic002G215300 Sobic001G481600 Sobic001G481600 Sobic001G309600--Sobic001G481600 Sobic001G397200--Sobic010G032100 Sobic001G397200--Sobic001G309600 Sobic001G397200--Sobic006G032700 Sobic001G397200--Sobic001G481500 Sobic001G397200--Sobic003G086600 Sobic008G070350 Sobic008G070350 Sobic001G397200--Sobic008G070350 Sobic002G068600 Sobic002G068600 Sobic001G397200--Sobic002G068600 Sobic003G367200 Sobic003G367200 Sobic001G397200--Sobic003G367200 Sobic007G026600 Sobic007G026600 Sobic001G397200--Sobic007G026600 Sobic001G481500--Sobic001G309600 Sobic001G481500--Sobic006G032700 Sobic001G481500--Sobic001G397200 Sobic001G481500--Sobic010G032100 Sobic001G481500--Sobic001G149800 Sobic001G481500--Sobic003G138300 Sobic001G481500--Sobic003G086600 Sobic001G481500--Sobic002G215300 Sobic001G481500--Sobic002G068600 Sobic010G032100--Sobic001G397200 Sobic010G032100--Sobic002G068600 Sobic010G031100 Sobic010G031100 Sobic010G032100--Sobic010G031100 Sobic002G261200 Sobic002G261200 Sobic010G032100--Sobic002G261200 Sobic010G032100--Sobic001G149800 Sobic010G032100--Sobic001G309600 Sobic010G032100--Sobic006G032700 Sobic003G394400 Sobic003G394400 Sobic010G032100--Sobic003G394400 Sobic010G032100--Sobic001G481500 Sobic006G032700--Sobic003G138300 Sobic006G032700--Sobic010G032100 Sobic006G032700--Sobic001G309600 Sobic006G032700--Sobic001G397200 Sobic006G032700--Sobic001G481500 Sobic001G354200 Sobic001G354200 Sobic006G032700--Sobic001G354200 Sobic006G032700--Sobic010G031100 Sobic006G032700--Sobic002G215300 Sobic006G032700--Sobic001G149800 Sobic001G149800--Sobic010G032100 Sobic001G149800--Sobic002G068600 Sobic001G149800--Sobic010G031100 Sobic001G149800--Sobic003G394400 Sobic001G149800--Sobic003G086600 Sobic001G254100 Sobic001G254100 Sobic001G149800--Sobic001G254100 Sobic001G107800 Sobic001G107800 Sobic001G149800--Sobic001G107800 Sobic001G149800--Sobic001G481500 Sobic001G149800--Sobic001G309600 Sobic003G138300--Sobic006G032700 Sobic003G138300--Sobic001G309600 Sobic003G138300--Sobic002G215300 Sobic003G138300--Sobic003G367200 Sobic003G138300--Sobic010G032100 Sobic003G138300--Sobic001G397200 Sobic003G138300--Sobic001G481500 Sobic003G138300--Sobic010G031100 Sobic003G138300--Sobic001G149800 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic001G405500 Sobic001G405500 Sobic003G086600--Sobic001G405500 Sobic001G108200 Sobic001G108200 Sobic003G086600--Sobic001G108200 Sobic004G166200 Sobic004G166200 Sobic003G086600--Sobic004G166200 Sobic003G382800 Sobic003G382800 Sobic003G086600--Sobic003G382800 Sobic003G355100 Sobic003G355100 Sobic003G086600--Sobic003G355100 Sobic003G086600--Sobic001G397200 Sobic003G086600--Sobic007G026600 Sobic002G215300--Sobic010G031100 Sobic002G215300--Sobic003G138300 Sobic002G215300--Sobic001G309600 Sobic002G215300--Sobic001G149800 Sobic002G215300--Sobic010G032100 Sobic002G215300--Sobic006G032700 Sobic002G215300--Sobic001G481500 Sobic010G031300 Sobic010G031300 Sobic002G215300--Sobic010G031300 Sobic002G215300--Sobic003G394400 Sobic001G481600--Sobic001G309600 Sobic001G481600--Sobic007G026600 Sobic001G481600--Sobic001G405500 Sobic001G481600--Sobic001G397200 Sobic005G103500 Sobic005G103500 Sobic001G481600--Sobic005G103500 Sobic003G123600 Sobic003G123600 Sobic001G481600--Sobic003G123600 Sobic001G481600--Sobic001G149800 Sobic003G377100 Sobic003G377100 Sobic001G481600--Sobic003G377100 Sobic009G111200 Sobic009G111200 Sobic001G481600--Sobic009G111200
Octagon: transcription factors


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