Gene annotation
Transcriptome id Sobic.003G367200.1
Synonym Sb03g040870
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XQM3
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF106
NCBI CDD -
KEGG Orthology K19040; E3 ubiquitin-protein ligase ATL10/75/76/77/78
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G18773 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g64620.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039571 , Zm00025a026722
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
2 Sobic.006G275200 CHCH domain containing protein, expressed -
3 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
4 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
5 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
6 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
7 Sobic.007G015600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@- -
8 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
9 Sobic.003G369100 AP2 domain containing protein, expressed -
10 Sobic.003G138300 expressed protein -
11 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
12 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
13 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
14 Sobic.002G224500 down-regulated TF in developmental senescence(PubMedID : 27586543)@bHelix-loop-helix transcription factor, putative, expressed -
15 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
16 Sobic.001G097600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@"salidroside biosynthesis, ethanol degradation II, phytol degradation"(PubMedID : 21853065)@dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
17 Sobic.001G169500 - -
18 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
20 Sobic.001G309600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -


Gene co-expression network
sample Sobic003G367200 Sobic003G367200 Sobic004G336500 Sobic004G336500 Sobic003G367200--Sobic004G336500 Sobic006G275200 Sobic006G275200 Sobic003G367200--Sobic006G275200 Sobic003G086600 Sobic003G086600 Sobic003G367200--Sobic003G086600 Sobic003G382800 Sobic003G382800 Sobic003G367200--Sobic003G382800 Sobic001G397200 Sobic001G397200 Sobic003G367200--Sobic001G397200 Sobic004G280200 Sobic004G280200 Sobic003G367200--Sobic004G280200 Sobic007G015600 Sobic007G015600 Sobic003G367200--Sobic007G015600 Sobic001G140900 Sobic001G140900 Sobic003G367200--Sobic001G140900 Sobic003G369100 Sobic003G369100 Sobic003G367200--Sobic003G369100 Sobic009G069800 Sobic009G069800 Sobic004G336500--Sobic009G069800 Sobic004G336500--Sobic003G367200 Sobic001G169500 Sobic001G169500 Sobic004G336500--Sobic001G169500 Sobic007G008100 Sobic007G008100 Sobic004G336500--Sobic007G008100 Sobic001G112200 Sobic001G112200 Sobic004G336500--Sobic001G112200 Sobic010G225251 Sobic010G225251 Sobic004G336500--Sobic010G225251 Sobic004G336500--Sobic003G382800 Sobic001G280800 Sobic001G280800 Sobic004G336500--Sobic001G280800 Sobic001G138600 Sobic001G138600 Sobic004G336500--Sobic001G138600 Sobic008G136400 Sobic008G136400 Sobic006G275200--Sobic008G136400 Sobic002G393000 Sobic002G393000 Sobic006G275200--Sobic002G393000 Sobic009G008900 Sobic009G008900 Sobic006G275200--Sobic009G008900 Sobic006G173900 Sobic006G173900 Sobic006G275200--Sobic006G173900 Sobic001G097600 Sobic001G097600 Sobic006G275200--Sobic001G097600 Sobic001G119400 Sobic001G119400 Sobic006G275200--Sobic001G119400 Sobic006G275200--Sobic003G367200 Sobic001G317000 Sobic001G317000 Sobic006G275200--Sobic001G317000 Sobic001G038900 Sobic001G038900 Sobic006G275200--Sobic001G038900 Sobic002G068600 Sobic002G068600 Sobic003G086600--Sobic002G068600 Sobic003G394400 Sobic003G394400 Sobic003G086600--Sobic003G394400 Sobic001G405500 Sobic001G405500 Sobic003G086600--Sobic001G405500 Sobic001G108200 Sobic001G108200 Sobic003G086600--Sobic001G108200 Sobic004G166200 Sobic004G166200 Sobic003G086600--Sobic004G166200 Sobic003G086600--Sobic003G382800 Sobic003G355100 Sobic003G355100 Sobic003G086600--Sobic003G355100 Sobic003G086600--Sobic001G397200 Sobic007G026600 Sobic007G026600 Sobic003G086600--Sobic007G026600 Sobic003G382800--Sobic001G138600 Sobic004G141200 Sobic004G141200 Sobic003G382800--Sobic004G141200 Sobic003G382800--Sobic001G169500 Sobic003G382800--Sobic001G108200 Sobic003G382800--Sobic003G394400 Sobic003G382800--Sobic004G166200 Sobic003G382800--Sobic002G068600 Sobic003G382800--Sobic003G086600 Sobic003G148600 Sobic003G148600 Sobic003G382800--Sobic003G148600 Sobic010G032100 Sobic010G032100 Sobic001G397200--Sobic010G032100 Sobic001G309600 Sobic001G309600 Sobic001G397200--Sobic001G309600 Sobic006G032700 Sobic006G032700 Sobic001G397200--Sobic006G032700 Sobic001G481500 Sobic001G481500 Sobic001G397200--Sobic001G481500 Sobic001G397200--Sobic003G086600 Sobic008G070350 Sobic008G070350 Sobic001G397200--Sobic008G070350 Sobic001G397200--Sobic002G068600 Sobic001G397200--Sobic003G367200 Sobic001G397200--Sobic007G026600 Sobic009G169000 Sobic009G169000 Sobic004G280200--Sobic009G169000 Sobic004G280200--Sobic001G405500 Sobic004G280200--Sobic003G369100 Sobic004G280200--Sobic007G026600 Sobic004G280200--Sobic003G086600 Sobic004G280200--Sobic003G367200 Sobic003G144700 Sobic003G144700 Sobic004G280200--Sobic003G144700 Sobic004G280200--Sobic006G275200 Sobic002G261200 Sobic002G261200 Sobic004G280200--Sobic002G261200 Sobic007G015600--Sobic003G367200 Sobic007G015600--Sobic006G275200 Sobic007G015600--Sobic003G382800 Sobic004G100700 Sobic004G100700 Sobic007G015600--Sobic004G100700 Sobic007G015600--Sobic002G393000 Sobic007G015600--Sobic001G038900 Sobic007G015600--Sobic003G086600 Sobic009G183400 Sobic009G183400 Sobic007G015600--Sobic009G183400 Sobic003G345100 Sobic003G345100 Sobic007G015600--Sobic003G345100 Sobic008G050600 Sobic008G050600 Sobic001G140900--Sobic008G050600 Sobic001G140900--Sobic003G345100 Sobic001G140900--Sobic001G038900 Sobic005G063100 Sobic005G063100 Sobic001G140900--Sobic005G063100 Sobic001G140900--Sobic004G100700 Sobic001G140900--Sobic003G369100 Sobic001G367600 Sobic001G367600 Sobic001G140900--Sobic001G367600 Sobic001G140900--Sobic008G136400 Sobic001G140900--Sobic004G141200 Sobic003G369100--Sobic004G141200 Sobic007G074000 Sobic007G074000 Sobic003G369100--Sobic007G074000 Sobic003G369100--Sobic001G138600 Sobic003G369100--Sobic001G108200 Sobic003G369100--Sobic001G140900 Sobic003G369100--Sobic001G112200 Sobic003G369100--Sobic003G345100 Sobic003G369100--Sobic008G050600 Sobic001G308300 Sobic001G308300 Sobic003G369100--Sobic001G308300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.