Gene annotation
Transcriptome id Sobic.002G224500.1
Synonym HEC1, Sb02g026530
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
bHelix-loop-helix transcription factor, putative, expressed
UniProt C5X2A4
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF74
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G67060 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os09g28210.1 : bHelix-loop-helix transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a030637 , Zm00025a047240 , Zm00025a005410 , Zm00025a026998 , Zm00025a014024
Brachypodium KQK09409 , KQK10418 , KQJ90506 , KQJ98652
Barley HORVU5Hr1G068110.2 , HORVU5Hr1G068110.1 , HORVU3Hr1G087710.1 , HORVU7Hr1G054880.1 , HORVU7Hr1G054880.2
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
2 Sobic.003G334600 NAC domain transcription factor, putative, expressed -
3 Sobic.003G369100 AP2 domain containing protein, expressed -
4 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
5 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.001G138600 VQ domain containing protein, putative, expressed -
7 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
8 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
9 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.009G069800 Hexokinase-7(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Hexokinase 1 HXK1 (Os)(PubMedID : 27208977)@hexokinase, putative, expressed K00844: hexokinase
11 Sobic.004G304625 - K15095: (+)-neomenthol dehydrogenase
12 Sobic.010G225251 - -
13 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
14 Sobic.001G477600 zinc finger protein, putative, expressed -
15 Sobic.002G261200 expressed protein -
16 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
17 Sobic.007G015600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@- -
18 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
19 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
20 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic002G224500 Sobic002G224500 Sobic003G367200 Sobic003G367200 Sobic002G224500--Sobic003G367200 Sobic003G334600 Sobic003G334600 Sobic002G224500--Sobic003G334600 Sobic003G369100 Sobic003G369100 Sobic002G224500--Sobic003G369100 Sobic004G336500 Sobic004G336500 Sobic002G224500--Sobic004G336500 Sobic001G112200 Sobic001G112200 Sobic002G224500--Sobic001G112200 Sobic001G138600 Sobic001G138600 Sobic002G224500--Sobic001G138600 Sobic004G280200 Sobic004G280200 Sobic002G224500--Sobic004G280200 Sobic006G190100 Sobic006G190100 Sobic002G224500--Sobic006G190100 Sobic003G382800 Sobic003G382800 Sobic002G224500--Sobic003G382800 Sobic003G367200--Sobic004G336500 Sobic006G275200 Sobic006G275200 Sobic003G367200--Sobic006G275200 Sobic003G086600 Sobic003G086600 Sobic003G367200--Sobic003G086600 Sobic003G367200--Sobic003G382800 Sobic001G397200 Sobic001G397200 Sobic003G367200--Sobic001G397200 Sobic003G367200--Sobic004G280200 Sobic007G015600 Sobic007G015600 Sobic003G367200--Sobic007G015600 Sobic001G140900 Sobic001G140900 Sobic003G367200--Sobic001G140900 Sobic003G367200--Sobic003G369100 Sobic003G334600--Sobic003G369100 Sobic001G038900 Sobic001G038900 Sobic003G334600--Sobic001G038900 Sobic008G136400 Sobic008G136400 Sobic003G334600--Sobic008G136400 Sobic002G140400 Sobic002G140400 Sobic003G334600--Sobic002G140400 Sobic008G050600 Sobic008G050600 Sobic003G334600--Sobic008G050600 Sobic001G308300 Sobic001G308300 Sobic003G334600--Sobic001G308300 Sobic007G074000 Sobic007G074000 Sobic003G334600--Sobic007G074000 Sobic003G387000 Sobic003G387000 Sobic003G334600--Sobic003G387000 Sobic003G345100 Sobic003G345100 Sobic003G334600--Sobic003G345100 Sobic004G141200 Sobic004G141200 Sobic003G369100--Sobic004G141200 Sobic003G369100--Sobic007G074000 Sobic003G369100--Sobic001G138600 Sobic001G108200 Sobic001G108200 Sobic003G369100--Sobic001G108200 Sobic003G369100--Sobic001G140900 Sobic003G369100--Sobic001G112200 Sobic003G369100--Sobic003G345100 Sobic003G369100--Sobic008G050600 Sobic003G369100--Sobic001G308300 Sobic009G069800 Sobic009G069800 Sobic004G336500--Sobic009G069800 Sobic004G336500--Sobic003G367200 Sobic001G169500 Sobic001G169500 Sobic004G336500--Sobic001G169500 Sobic007G008100 Sobic007G008100 Sobic004G336500--Sobic007G008100 Sobic004G336500--Sobic001G112200 Sobic010G225251 Sobic010G225251 Sobic004G336500--Sobic010G225251 Sobic004G336500--Sobic003G382800 Sobic001G280800 Sobic001G280800 Sobic004G336500--Sobic001G280800 Sobic004G336500--Sobic001G138600 Sobic009G184000 Sobic009G184000 Sobic001G112200--Sobic009G184000 Sobic001G318700 Sobic001G318700 Sobic001G112200--Sobic001G318700 Sobic001G112200--Sobic001G138600 Sobic001G112200--Sobic003G369100 Sobic007G169700 Sobic007G169700 Sobic001G112200--Sobic007G169700 Sobic004G237800 Sobic004G237800 Sobic001G112200--Sobic004G237800 Sobic009G145700 Sobic009G145700 Sobic001G112200--Sobic009G145700 Sobic001G112200--Sobic007G074000 Sobic001G310600 Sobic001G310600 Sobic001G112200--Sobic001G310600 Sobic001G138600--Sobic003G382800 Sobic001G138600--Sobic001G112200 Sobic001G138600--Sobic004G141200 Sobic001G138600--Sobic003G369100 Sobic001G138600--Sobic009G184000 Sobic001G079300 Sobic001G079300 Sobic001G138600--Sobic001G079300 Sobic001G138600--Sobic007G074000 Sobic001G459800 Sobic001G459800 Sobic001G138600--Sobic001G459800 Sobic001G391500 Sobic001G391500 Sobic001G138600--Sobic001G391500 Sobic009G169000 Sobic009G169000 Sobic004G280200--Sobic009G169000 Sobic001G405500 Sobic001G405500 Sobic004G280200--Sobic001G405500 Sobic004G280200--Sobic003G369100 Sobic007G026600 Sobic007G026600 Sobic004G280200--Sobic007G026600 Sobic004G280200--Sobic003G086600 Sobic004G280200--Sobic003G367200 Sobic003G144700 Sobic003G144700 Sobic004G280200--Sobic003G144700 Sobic004G280200--Sobic006G275200 Sobic002G261200 Sobic002G261200 Sobic004G280200--Sobic002G261200 Sobic001G443800 Sobic001G443800 Sobic006G190100--Sobic001G443800 Sobic006G190100--Sobic001G138600 Sobic006G190500 Sobic006G190500 Sobic006G190100--Sobic006G190500 Sobic007G213800 Sobic007G213800 Sobic006G190100--Sobic007G213800 Sobic006G190100--Sobic002G261200 Sobic003G148600 Sobic003G148600 Sobic006G190100--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic006G190100--Sobic001G371800 Sobic006G190100--Sobic001G391500 Sobic010G198600 Sobic010G198600 Sobic006G190100--Sobic010G198600 Sobic003G382800--Sobic001G138600 Sobic003G382800--Sobic004G141200 Sobic003G382800--Sobic001G169500 Sobic003G382800--Sobic001G108200 Sobic003G394400 Sobic003G394400 Sobic003G382800--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic003G382800--Sobic004G166200 Sobic002G068600 Sobic002G068600 Sobic003G382800--Sobic002G068600 Sobic003G382800--Sobic003G086600 Sobic003G382800--Sobic003G148600
Octagon: transcription factors


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