Gene annotation
Transcriptome id Sobic.007G015600.2
Synonym Sb07g001405
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
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UniProt A0A1B6PF10
Pfam -
Panther DB PTHR36023 PTHR36023:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
2 Sobic.006G275200 CHCH domain containing protein, expressed -
3 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
5 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
6 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
7 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
8 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
9 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
10 Sobic.001G169500 - -
11 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
12 Sobic.001G477600 zinc finger protein, putative, expressed -
13 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
14 Sobic.003G393700 zinc finger, RING-type, putative, expressed -
15 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
16 Sobic.006G092500 expressed protein -
17 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
18 Sobic.008G136400 expressed protein -
19 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
20 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -


Gene co-expression network
sample Sobic007G015600 Sobic007G015600 Sobic003G367200 Sobic003G367200 Sobic007G015600--Sobic003G367200 Sobic006G275200 Sobic006G275200 Sobic007G015600--Sobic006G275200 Sobic003G382800 Sobic003G382800 Sobic007G015600--Sobic003G382800 Sobic004G100700 Sobic004G100700 Sobic007G015600--Sobic004G100700 Sobic002G393000 Sobic002G393000 Sobic007G015600--Sobic002G393000 Sobic001G038900 Sobic001G038900 Sobic007G015600--Sobic001G038900 Sobic003G086600 Sobic003G086600 Sobic007G015600--Sobic003G086600 Sobic009G183400 Sobic009G183400 Sobic007G015600--Sobic009G183400 Sobic003G345100 Sobic003G345100 Sobic007G015600--Sobic003G345100 Sobic004G336500 Sobic004G336500 Sobic003G367200--Sobic004G336500 Sobic003G367200--Sobic006G275200 Sobic003G367200--Sobic003G086600 Sobic003G367200--Sobic003G382800 Sobic001G397200 Sobic001G397200 Sobic003G367200--Sobic001G397200 Sobic004G280200 Sobic004G280200 Sobic003G367200--Sobic004G280200 Sobic003G367200--Sobic007G015600 Sobic001G140900 Sobic001G140900 Sobic003G367200--Sobic001G140900 Sobic003G369100 Sobic003G369100 Sobic003G367200--Sobic003G369100 Sobic008G136400 Sobic008G136400 Sobic006G275200--Sobic008G136400 Sobic006G275200--Sobic002G393000 Sobic009G008900 Sobic009G008900 Sobic006G275200--Sobic009G008900 Sobic006G173900 Sobic006G173900 Sobic006G275200--Sobic006G173900 Sobic001G097600 Sobic001G097600 Sobic006G275200--Sobic001G097600 Sobic001G119400 Sobic001G119400 Sobic006G275200--Sobic001G119400 Sobic006G275200--Sobic003G367200 Sobic001G317000 Sobic001G317000 Sobic006G275200--Sobic001G317000 Sobic006G275200--Sobic001G038900 Sobic001G138600 Sobic001G138600 Sobic003G382800--Sobic001G138600 Sobic004G141200 Sobic004G141200 Sobic003G382800--Sobic004G141200 Sobic001G169500 Sobic001G169500 Sobic003G382800--Sobic001G169500 Sobic001G108200 Sobic001G108200 Sobic003G382800--Sobic001G108200 Sobic003G394400 Sobic003G394400 Sobic003G382800--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic003G382800--Sobic004G166200 Sobic002G068600 Sobic002G068600 Sobic003G382800--Sobic002G068600 Sobic003G382800--Sobic003G086600 Sobic003G148600 Sobic003G148600 Sobic003G382800--Sobic003G148600 Sobic005G011300 Sobic005G011300 Sobic004G100700--Sobic005G011300 Sobic002G188900 Sobic002G188900 Sobic004G100700--Sobic002G188900 Sobic004G100700--Sobic001G140900 Sobic004G100700--Sobic001G108200 Sobic004G100700--Sobic001G169500 Sobic004G100700--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic004G100700--Sobic003G393900 Sobic004G301000 Sobic004G301000 Sobic004G100700--Sobic004G301000 Sobic001G367600 Sobic001G367600 Sobic004G100700--Sobic001G367600 Sobic002G393000--Sobic001G119400 Sobic002G393000--Sobic006G275200 Sobic002G393000--Sobic006G173900 Sobic001G423800 Sobic001G423800 Sobic002G393000--Sobic001G423800 Sobic002G393000--Sobic009G008900 Sobic002G393000--Sobic008G136400 Sobic010G099900 Sobic010G099900 Sobic002G393000--Sobic010G099900 Sobic002G414600 Sobic002G414600 Sobic002G393000--Sobic002G414600 Sobic002G393000--Sobic009G183400 Sobic002G140400 Sobic002G140400 Sobic001G038900--Sobic002G140400 Sobic001G038900--Sobic001G140900 Sobic001G038900--Sobic008G136400 Sobic008G050600 Sobic008G050600 Sobic001G038900--Sobic008G050600 Sobic001G038900--Sobic001G423800 Sobic009G159400 Sobic009G159400 Sobic001G038900--Sobic009G159400 Sobic001G038900--Sobic003G345100 Sobic001G038900--Sobic001G367600 Sobic004G189400 Sobic004G189400 Sobic001G038900--Sobic004G189400 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic001G405500 Sobic001G405500 Sobic003G086600--Sobic001G405500 Sobic003G086600--Sobic001G108200 Sobic003G086600--Sobic004G166200 Sobic003G086600--Sobic003G382800 Sobic003G355100 Sobic003G355100 Sobic003G086600--Sobic003G355100 Sobic003G086600--Sobic001G397200 Sobic007G026600 Sobic007G026600 Sobic003G086600--Sobic007G026600 Sobic001G476500 Sobic001G476500 Sobic009G183400--Sobic001G476500 Sobic009G183400--Sobic001G119400 Sobic006G092500 Sobic006G092500 Sobic009G183400--Sobic006G092500 Sobic009G183400--Sobic001G038900 Sobic009G183400--Sobic001G097600 Sobic009G061200 Sobic009G061200 Sobic009G183400--Sobic009G061200 Sobic009G183400--Sobic002G414600 Sobic009G183400--Sobic004G100700 Sobic009G183400--Sobic001G140900 Sobic003G345100--Sobic008G050600 Sobic005G063100 Sobic005G063100 Sobic003G345100--Sobic005G063100 Sobic009G164600 Sobic009G164600 Sobic003G345100--Sobic009G164600 Sobic003G345100--Sobic001G140900 Sobic004G208700 Sobic004G208700 Sobic003G345100--Sobic004G208700 Sobic005G099000 Sobic005G099000 Sobic003G345100--Sobic005G099000 Sobic003G345100--Sobic009G159400 Sobic003G345100--Sobic003G369100 Sobic001G435000 Sobic001G435000 Sobic003G345100--Sobic001G435000
Octagon: transcription factors


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