Gene annotation
| Transcriptome id | Sobic.006G032700.2,Sobic.006G032700.4,Sobic.006G032700.3 |
|---|---|
| Synonym | Sb06g003340, STR16 |
| Functional annotation | rhodanese-like domain containing protein, putative, expressed |
| UniProt | A0A1B6PJU3 , A0A1B6PJS5 , A0A1B6PJV6 |
| Pfam | PF00581 |
| Panther DB | PTHR12231 PTHR12231:SF112 |
| NCBI CDD | KOG1530; Rhodanese-related sulfurtransferase |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G21045 : Rhodanese/Cell cycle control phosphatase superfamily protein,sulfurtransferase 18,sulfurtransferase protein 16 |
|---|---|
| RAP-DB (Rice) | LOC_Os04g17660.1,LOC_Os04g17660.3 : rhodanese-like domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a055698 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.006G032700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G138300 | expressed protein | - |
| 2 | Sobic.010G032100 | Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed | - |
| 3 | Sobic.001G309600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed | - |
| 4 | Sobic.001G397200 | universal stress protein domain containing protein, putative, expressed | - |
| 5 | Sobic.001G481500 | - | - |
| 6 | Sobic.001G354200 | O-methyltransferase, putative, expressed | - |
| 7 | Sobic.010G031100 | Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed | - |
| 8 | Sobic.002G215300 | expressed protein | - |
| 9 | Sobic.001G149800 | 2-aminoethanethiol dioxygenase, putative, expressed | K10712: cysteamine dioxygenase |
| 10 | Sobic.010G275100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Ser/Thr-rich protein T10 in DGCR region, putative, expressed | - |
| 11 | Sobic.005G103500 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed | - |
| 12 | Sobic.008G070350 | - | K01945: phosphoribosylamine---glycine ligase |
| 13 | Sobic.001G481600 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 14 | Sobic.003G367200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed | K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78 |
| 15 | Sobic.002G261200 | expressed protein | - |
| 16 | Sobic.010G031300 | auxin-induced protein 5NG4, putative, expressed | - |
| 17 | Sobic.007G026600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed | - |
| 18 | Sobic.002G068600 | oxidoreductase, putative, expressed | K00472: prolyl 4-hydroxylase |
| 19 | Sobic.003G086600 | "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 20 | Sobic.001G254100 | "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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