Gene annotation
Transcriptome id Sobic.008G070350.2,Sobic.008G070350.6,Sobic.008G070350.1,Sobic.008G070350.3,Sobic.008G070350.5,Sobic.008G070350.4
Synonym -
Functional annotation -
UniProt A0A1Z5R621 , A0A1Z5R553
Pfam PF13535 PF02843 PF02844
Panther DB PTHR10520 PTHR10520:SF35
NCBI CDD -
KEGG Orthology K01945; phosphoribosylamine---glycine ligase
Gene Ontology GO:0009113; purine nucleobase biosynthetic process GO:0004637phosphoribosylamine-glycine ligase activity


Orthologs (automatic annotation)
TAIR AT1G09830 : Glycinamide ribonucleotide (GAR) synthetase
RAP-DB (Rice) LOC_Os12g09540.1,LOC_Os12g09540.2 : phosphoribosylamine--glycine ligase, putative, expressed
MaizeGDB (Corn) Zm00025a044405
Brachypodium KQK04819 , PNT63859 , KQK04825 , KQK04824 , KQJ88867 , KQK04822 , KQK04821 , KQK04820
Barley HORVU4Hr1G080000.2 , HORVU4Hr1G080000.1
Wheat TraesCS4D02G311700 , TraesCS4D02G311700 , TraesCS4B02G314600 , TraesCS4A02G413900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
2 Sobic.009G035200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
3 Sobic.005G051200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
4 Sobic.005G103500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed -
5 Sobic.001G309600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -
6 Sobic.006G032700 rhodanese-like domain containing protein, putative, expressed -
7 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
8 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
9 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
10 Sobic.006G275200 CHCH domain containing protein, expressed -
11 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
12 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
13 Sobic.001G481600 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
14 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
15 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
16 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
17 Sobic.003G387000 expressed protein -
18 Sobic.009G121300 transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
19 Sobic.010G238900 oryzain beta chain precursor, putative, expressed -
20 Sobic.009G198000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@O-methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic008G070350 Sobic008G070350 Sobic001G397200 Sobic001G397200 Sobic008G070350--Sobic001G397200 Sobic009G035200 Sobic009G035200 Sobic008G070350--Sobic009G035200 Sobic005G051200 Sobic005G051200 Sobic008G070350--Sobic005G051200 Sobic005G103500 Sobic005G103500 Sobic008G070350--Sobic005G103500 Sobic001G309600 Sobic001G309600 Sobic008G070350--Sobic001G309600 Sobic006G032700 Sobic006G032700 Sobic008G070350--Sobic006G032700 Sobic007G026600 Sobic007G026600 Sobic008G070350--Sobic007G026600 Sobic004G280200 Sobic004G280200 Sobic008G070350--Sobic004G280200 Sobic003G086600 Sobic003G086600 Sobic008G070350--Sobic003G086600 Sobic010G032100 Sobic010G032100 Sobic001G397200--Sobic010G032100 Sobic001G397200--Sobic001G309600 Sobic001G397200--Sobic006G032700 Sobic001G481500 Sobic001G481500 Sobic001G397200--Sobic001G481500 Sobic001G397200--Sobic003G086600 Sobic001G397200--Sobic008G070350 Sobic002G068600 Sobic002G068600 Sobic001G397200--Sobic002G068600 Sobic003G367200 Sobic003G367200 Sobic001G397200--Sobic003G367200 Sobic001G397200--Sobic007G026600 Sobic009G035200--Sobic005G051200 Sobic009G229000 Sobic009G229000 Sobic009G035200--Sobic009G229000 Sobic008G050600 Sobic008G050600 Sobic009G035200--Sobic008G050600 Sobic002G414600 Sobic002G414600 Sobic009G035200--Sobic002G414600 Sobic008G136400 Sobic008G136400 Sobic009G035200--Sobic008G136400 Sobic003G345100 Sobic003G345100 Sobic009G035200--Sobic003G345100 Sobic005G063100 Sobic005G063100 Sobic009G035200--Sobic005G063100 Sobic006G092500 Sobic006G092500 Sobic009G035200--Sobic006G092500 Sobic001G317200 Sobic001G317200 Sobic009G035200--Sobic001G317200 Sobic005G051200--Sobic001G317200 Sobic005G051200--Sobic009G035200 Sobic005G051200--Sobic008G050600 Sobic002G416600 Sobic002G416600 Sobic005G051200--Sobic002G416600 Sobic009G164600 Sobic009G164600 Sobic005G051200--Sobic009G164600 Sobic005G051200--Sobic003G345100 Sobic003G286600 Sobic003G286600 Sobic005G051200--Sobic003G286600 Sobic005G051200--Sobic005G063100 Sobic001G252300 Sobic001G252300 Sobic005G051200--Sobic001G252300 Sobic001G405500 Sobic001G405500 Sobic005G103500--Sobic001G405500 Sobic005G103500--Sobic001G397200 Sobic005G103300 Sobic005G103300 Sobic005G103500--Sobic005G103300 Sobic001G481600 Sobic001G481600 Sobic005G103500--Sobic001G481600 Sobic005G103500--Sobic007G026600 Sobic005G103500--Sobic001G309600 Sobic005G103500--Sobic008G070350 Sobic003G387000 Sobic003G387000 Sobic005G103500--Sobic003G387000 Sobic005G103500--Sobic006G032700 Sobic001G309600--Sobic001G397200 Sobic001G309600--Sobic001G481500 Sobic001G309600--Sobic010G032100 Sobic001G309600--Sobic006G032700 Sobic001G149800 Sobic001G149800 Sobic001G309600--Sobic001G149800 Sobic003G138300 Sobic003G138300 Sobic001G309600--Sobic003G138300 Sobic001G309600--Sobic003G086600 Sobic002G215300 Sobic002G215300 Sobic001G309600--Sobic002G215300 Sobic001G309600--Sobic001G481600 Sobic006G032700--Sobic003G138300 Sobic006G032700--Sobic010G032100 Sobic006G032700--Sobic001G309600 Sobic006G032700--Sobic001G397200 Sobic006G032700--Sobic001G481500 Sobic001G354200 Sobic001G354200 Sobic006G032700--Sobic001G354200 Sobic010G031100 Sobic010G031100 Sobic006G032700--Sobic010G031100 Sobic006G032700--Sobic002G215300 Sobic006G032700--Sobic001G149800 Sobic007G026600--Sobic002G068600 Sobic007G026600--Sobic001G405500 Sobic003G148600 Sobic003G148600 Sobic007G026600--Sobic003G148600 Sobic001G107800 Sobic001G107800 Sobic007G026600--Sobic001G107800 Sobic007G026600--Sobic003G086600 Sobic007G026600--Sobic004G280200 Sobic003G123600 Sobic003G123600 Sobic007G026600--Sobic003G123600 Sobic003G394400 Sobic003G394400 Sobic007G026600--Sobic003G394400 Sobic003G144700 Sobic003G144700 Sobic007G026600--Sobic003G144700 Sobic009G169000 Sobic009G169000 Sobic004G280200--Sobic009G169000 Sobic004G280200--Sobic001G405500 Sobic003G369100 Sobic003G369100 Sobic004G280200--Sobic003G369100 Sobic004G280200--Sobic007G026600 Sobic004G280200--Sobic003G086600 Sobic004G280200--Sobic003G367200 Sobic004G280200--Sobic003G144700 Sobic006G275200 Sobic006G275200 Sobic004G280200--Sobic006G275200 Sobic002G261200 Sobic002G261200 Sobic004G280200--Sobic002G261200 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic003G086600--Sobic001G405500 Sobic001G108200 Sobic001G108200 Sobic003G086600--Sobic001G108200 Sobic004G166200 Sobic004G166200 Sobic003G086600--Sobic004G166200 Sobic003G382800 Sobic003G382800 Sobic003G086600--Sobic003G382800 Sobic003G355100 Sobic003G355100 Sobic003G086600--Sobic003G355100 Sobic003G086600--Sobic001G397200 Sobic003G086600--Sobic007G026600
Octagon: transcription factors


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