Gene annotation
| Transcriptome id | Sobic.002G284000.1 |
|---|---|
| Synonym | Sb02g031650 |
| Functional annotation | pyridoxal-dependent decarboxylase protein, putative, expressed |
| UniProt | C5X700 |
| Pfam | PF00278 PF02784 |
| Panther DB | PTHR11482 PTHR11482:SF6 |
| NCBI CDD | KOG0622; Ornithine decarboxylase |
| KEGG Orthology | K01581; E4.1.1.17, ODC1, speC, ornithine decarboxylase |
| Gene Ontology | GO:0003824; catalytic activity |
Orthologs (automatic annotation)
| TAIR | AT5G11880 : Pyridoxal-dependent decarboxylase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os09g37120.1 : pyridoxal-dependent decarboxylase protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a049288 , Zm00025a047826 |
| Brachypodium | PNT65044 |
| Barley | HORVU7Hr1G032100.1 , HORVU7Hr1G032100.2 , HORVU5Hr1G084750.3 , HORVU5Hr1G084750.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G201200 | - | - |
| 2 | Sobic.007G147700 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed | - |
| 3 | Sobic.007G006300 | expressed protein | - |
| 4 | Sobic.001G279350 | - | - |
| 5 | Sobic.001G076100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 6 | Sobic.001G481300 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 7 | Sobic.005G086400 | hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 8 | Sobic.004G109600 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 9 | Sobic.001G371800 | expressed protein | - |
| 10 | Sobic.001G425600 | "similar to 17.4 kDa class I heat shock protein 3, maped into a unique stay green QTL (QSTG11_1) involved in drought tolerance."(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@similar to 17.4 kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 11 | Sobic.010G198500 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 12 | Sobic.001G443800 | glutamate decarboxylase, putative, expressed | K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase |
| 13 | Sobic.008G102900 | expressed protein | - |
| 14 | Sobic.003G197200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed | K05933: aminocyclopropanecarboxylate oxidase |
| 15 | Sobic.004G109700 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 16 | Sobic.008G118700 | respiratory burst oxidase, putative, expressed | - |
| 17 | Sobic.001G105900 | "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed | K01762: 1-aminocyclopropane-1-carboxylate synthase |
| 18 | Sobic.004G109800 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 19 | Sobic.004G166200 | expressed protein | - |
| 20 | Sobic.007G214600 | EF hand family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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