Gene annotation
| Transcriptome id | Sobic.007G147700.1 |
|---|---|
| Synonym | SbSAUR56, Sb07g022200, small auxin up RNA |
| Functional annotation | "domain confirmed by Pfam database, expression not supported" (PubMedID : 20499123) OsSAUR33 - Auxin-responsive SAUR gene family member, expressed |
| UniProt | C5YLT0 |
| Pfam | PF02519 |
| Panther DB | PTHR31374 PTHR31374:SF52 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0009733; response to auxin |
Orthologs (automatic annotation)
| TAIR | AT5G20820 : SAUR-like auxin-responsive protein family |
|---|---|
| RAP-DB (Rice) | LOC_Os08g35110.1 : OsSAUR33 - Auxin-responsive SAUR gene family member, expressed |
| MaizeGDB (Corn) | Zm00025a030735 , Zm00025a005774 , Zm00025a005775 , Zm00025a005772 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G198500 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 2 | Sobic.003G197200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed | K05933: aminocyclopropanecarboxylate oxidase |
| 3 | Sobic.001G201200 | - | - |
| 4 | Sobic.001G443800 | glutamate decarboxylase, putative, expressed | K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase |
| 5 | Sobic.007G214600 | EF hand family protein, putative, expressed | - |
| 6 | Sobic.001G105900 | "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed | K01762: 1-aminocyclopropane-1-carboxylate synthase |
| 7 | Sobic.001G481300 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 8 | Sobic.003G355100 | expressed protein | - |
| 9 | Sobic.001G279350 | - | - |
| 10 | Sobic.003G148600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 11 | Sobic.004G109600 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 12 | Sobic.007G006300 | expressed protein | - |
| 13 | Sobic.002G284000 | pyridoxal-dependent decarboxylase protein, putative, expressed | K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase |
| 14 | Sobic.001G195200 | cytochrome P450, putative, expressed | - |
| 15 | Sobic.001G371800 | expressed protein | - |
| 16 | Sobic.001G076100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 17 | Sobic.007G178000 | heat shock protein DnaJ, putative, expressed | - |
| 18 | Sobic.004G166200 | expressed protein | - |
| 19 | Sobic.009G189501 | - | - |
| 20 | Sobic.003G377100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed | K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase |
Gene co-expression network
Octagon: transcription factors
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