Gene annotation
Transcriptome id Sobic.001G105900.1
Synonym ACS2, 1-aminocyclopropane-1-carboxylic acid synthase, ACS8, Sb01g009450
Functional annotation "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application" (PubMedID : 24813726)
aminotransferase, classes I and II, domain containing protein, expressed
UniProt C5WM16
Pfam PF00155
Panther DB PTHR11751 PTHR11751:SF340
NCBI CDD -
KEGG Orthology K01762; 1-aminocyclopropane-1-carboxylate synthase
Gene Ontology GO:0009058; biosynthetic process


Orthologs (automatic annotation)
TAIR AT4G37770 : 1-amino-cyclopropane-1-carboxylate synthase 8
RAP-DB (Rice) LOC_Os03g51740.1 : aminotransferase, classes I and II, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010116 , Zm00025a023034 , Zm00025a007983 , Zm00025a056733
Brachypodium KQJ84167 , KQK13419 , PNT74204
Barley HORVU2Hr1G094230.5 , HORVU2Hr1G094230.2 , HORVU2Hr1G094230.3 , HORVU2Hr1G094230.4 , HORVU4Hr1G009800.1 , HORVU4Hr1G009800.3 , HORVU4Hr1G009800.2 , HORVU4Hr1G009800.5 , HORVU4Hr1G009800.4
Wheat TraesCS2B02G414800 , TraesCS2A02G396400 , TraesCS3B02G125200 , TraesCS4D02G058200 , TraesCS4B02G058200 , TraesCS2D02G394200 , TraesCS4A02G256500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G147700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
2 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
3 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
4 Sobic.002G291900 RING-H2 finger protein, putative, expressed -
5 Sobic.001G190100 serine/threonine-protein kinase receptor precursor, putative, expressed -
6 Sobic.001G201200 - -
7 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.009G148100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G371800 expressed protein -
12 Sobic.003G377100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
13 Sobic.004G166200 expressed protein -
14 Sobic.007G214600 EF hand family protein, putative, expressed -
15 Sobic.003G355100 expressed protein -
16 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
17 Sobic.007G178000 heat shock protein DnaJ, putative, expressed -
18 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
19 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G105900 Sobic001G105900 Sobic007G147700 Sobic007G147700 Sobic001G105900--Sobic007G147700 Sobic001G443800 Sobic001G443800 Sobic001G105900--Sobic001G443800 Sobic003G197200 Sobic003G197200 Sobic001G105900--Sobic003G197200 Sobic002G291900 Sobic002G291900 Sobic001G105900--Sobic002G291900 Sobic001G190100 Sobic001G190100 Sobic001G105900--Sobic001G190100 Sobic001G201200 Sobic001G201200 Sobic001G105900--Sobic001G201200 Sobic010G198500 Sobic010G198500 Sobic001G105900--Sobic010G198500 Sobic003G148600 Sobic003G148600 Sobic001G105900--Sobic003G148600 Sobic009G148100 Sobic009G148100 Sobic001G105900--Sobic009G148100 Sobic007G147700--Sobic010G198500 Sobic007G147700--Sobic003G197200 Sobic007G147700--Sobic001G201200 Sobic007G147700--Sobic001G443800 Sobic007G214600 Sobic007G214600 Sobic007G147700--Sobic007G214600 Sobic007G147700--Sobic001G105900 Sobic001G481300 Sobic001G481300 Sobic007G147700--Sobic001G481300 Sobic003G355100 Sobic003G355100 Sobic007G147700--Sobic003G355100 Sobic001G279350 Sobic001G279350 Sobic007G147700--Sobic001G279350 Sobic001G443800--Sobic003G197200 Sobic001G443800--Sobic001G201200 Sobic001G076100 Sobic001G076100 Sobic001G443800--Sobic001G076100 Sobic001G443800--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic001G443800--Sobic001G371800 Sobic001G443800--Sobic010G198500 Sobic003G123600 Sobic003G123600 Sobic001G443800--Sobic003G123600 Sobic001G443800--Sobic007G214600 Sobic006G190100 Sobic006G190100 Sobic001G443800--Sobic006G190100 Sobic003G197200--Sobic003G148600 Sobic003G197200--Sobic007G214600 Sobic003G197200--Sobic003G355100 Sobic003G144700 Sobic003G144700 Sobic003G197200--Sobic003G144700 Sobic003G197200--Sobic001G443800 Sobic003G197200--Sobic001G481300 Sobic003G197200--Sobic001G201200 Sobic004G109600 Sobic004G109600 Sobic003G197200--Sobic004G109600 Sobic003G197200--Sobic003G123600 Sobic002G291900--Sobic001G443800 Sobic002G291900--Sobic003G197200 Sobic002G291900--Sobic010G198500 Sobic003G260300 Sobic003G260300 Sobic002G291900--Sobic003G260300 Sobic002G291900--Sobic007G214600 Sobic002G291900--Sobic003G148600 Sobic002G291900--Sobic001G105900 Sobic007G213800 Sobic007G213800 Sobic002G291900--Sobic007G213800 Sobic002G291900--Sobic003G355100 Sobic009G189501 Sobic009G189501 Sobic001G190100--Sobic009G189501 Sobic007G006300 Sobic007G006300 Sobic001G190100--Sobic007G006300 Sobic001G397300 Sobic001G397300 Sobic001G190100--Sobic001G397300 Sobic001G190100--Sobic001G105900 Sobic002G234400 Sobic002G234400 Sobic001G190100--Sobic002G234400 Sobic001G391500 Sobic001G391500 Sobic001G190100--Sobic001G391500 Sobic002G250000 Sobic002G250000 Sobic001G190100--Sobic002G250000 Sobic001G190100--Sobic003G260300 Sobic002G339000 Sobic002G339000 Sobic001G190100--Sobic002G339000 Sobic001G201200--Sobic001G443800 Sobic001G201200--Sobic001G371800 Sobic001G201200--Sobic003G197200 Sobic001G201200--Sobic010G198500 Sobic001G201200--Sobic001G076100 Sobic001G201200--Sobic007G214600 Sobic001G107800 Sobic001G107800 Sobic001G201200--Sobic001G107800 Sobic001G201200--Sobic003G148600 Sobic001G201200--Sobic007G147700 Sobic010G198500--Sobic007G214600 Sobic010G198500--Sobic001G201200 Sobic010G198500--Sobic003G197200 Sobic010G198500--Sobic007G147700 Sobic010G198500--Sobic001G443800 Sobic010G198500--Sobic004G109600 Sobic010G198500--Sobic001G371800 Sobic010G198500--Sobic003G355100 Sobic010G198500--Sobic001G481300 Sobic003G148600--Sobic003G197200 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic003G148600--Sobic007G214600 Sobic004G166200 Sobic004G166200 Sobic003G148600--Sobic004G166200 Sobic003G148600--Sobic001G107800 Sobic001G405500 Sobic001G405500 Sobic003G148600--Sobic001G405500 Sobic003G394400 Sobic003G394400 Sobic003G148600--Sobic003G394400 Sobic009G148100--Sobic006G190100 Sobic010G198600 Sobic010G198600 Sobic009G148100--Sobic010G198600 Sobic009G148100--Sobic001G105900 Sobic006G190500 Sobic006G190500 Sobic009G148100--Sobic006G190500 Sobic009G148100--Sobic001G076100 Sobic009G148100--Sobic001G443800 Sobic002G389000 Sobic002G389000 Sobic009G148100--Sobic002G389000 Sobic004G088300 Sobic004G088300 Sobic009G148100--Sobic004G088300 Sobic009G148100--Sobic002G291900
Octagon: transcription factors


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