Gene annotation
Transcriptome id Sobic.002G291900.1
Synonym Sb02g032320
Functional annotation RING-H2 finger protein, putative, expressed
UniProt C5X7R2
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF162
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G20823 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g38110.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a013835 , Zm00025a047942
Brachypodium KQJ84224 , KQJ91398
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
2 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
3 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.007G214600 EF hand family protein, putative, expressed -
6 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
7 Sobic.001G105900 "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase
8 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
9 Sobic.003G355100 expressed protein -
10 Sobic.001G201200 - -
11 Sobic.007G147700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
12 Sobic.001G138600 VQ domain containing protein, putative, expressed -
13 Sobic.004G166200 expressed protein -
14 Sobic.001G371800 expressed protein -
15 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
16 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.004G109600 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.002G282300 expressed protein -
19 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
20 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G291900 Sobic002G291900 Sobic001G443800 Sobic001G443800 Sobic002G291900--Sobic001G443800 Sobic003G197200 Sobic003G197200 Sobic002G291900--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic002G291900--Sobic010G198500 Sobic003G260300 Sobic003G260300 Sobic002G291900--Sobic003G260300 Sobic007G214600 Sobic007G214600 Sobic002G291900--Sobic007G214600 Sobic003G148600 Sobic003G148600 Sobic002G291900--Sobic003G148600 Sobic001G105900 Sobic001G105900 Sobic002G291900--Sobic001G105900 Sobic007G213800 Sobic007G213800 Sobic002G291900--Sobic007G213800 Sobic003G355100 Sobic003G355100 Sobic002G291900--Sobic003G355100 Sobic001G443800--Sobic003G197200 Sobic001G201200 Sobic001G201200 Sobic001G443800--Sobic001G201200 Sobic001G076100 Sobic001G076100 Sobic001G443800--Sobic001G076100 Sobic001G443800--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic001G443800--Sobic001G371800 Sobic001G443800--Sobic010G198500 Sobic003G123600 Sobic003G123600 Sobic001G443800--Sobic003G123600 Sobic001G443800--Sobic007G214600 Sobic006G190100 Sobic006G190100 Sobic001G443800--Sobic006G190100 Sobic003G197200--Sobic003G148600 Sobic003G197200--Sobic007G214600 Sobic003G197200--Sobic003G355100 Sobic003G144700 Sobic003G144700 Sobic003G197200--Sobic003G144700 Sobic003G197200--Sobic001G443800 Sobic001G481300 Sobic001G481300 Sobic003G197200--Sobic001G481300 Sobic003G197200--Sobic001G201200 Sobic004G109600 Sobic004G109600 Sobic003G197200--Sobic004G109600 Sobic003G197200--Sobic003G123600 Sobic010G198500--Sobic007G214600 Sobic010G198500--Sobic001G201200 Sobic010G198500--Sobic003G197200 Sobic007G147700 Sobic007G147700 Sobic010G198500--Sobic007G147700 Sobic010G198500--Sobic001G443800 Sobic010G198500--Sobic004G109600 Sobic010G198500--Sobic001G371800 Sobic010G198500--Sobic003G355100 Sobic010G198500--Sobic001G481300 Sobic003G228900 Sobic003G228900 Sobic003G260300--Sobic003G228900 Sobic001G079300 Sobic001G079300 Sobic003G260300--Sobic001G079300 Sobic004G191400 Sobic004G191400 Sobic003G260300--Sobic004G191400 Sobic006G075400 Sobic006G075400 Sobic003G260300--Sobic006G075400 Sobic003G432700 Sobic003G432700 Sobic003G260300--Sobic003G432700 Sobic001G502400 Sobic001G502400 Sobic003G260300--Sobic001G502400 Sobic009G184000 Sobic009G184000 Sobic003G260300--Sobic009G184000 Sobic004G191300 Sobic004G191300 Sobic003G260300--Sobic004G191300 Sobic001G195200 Sobic001G195200 Sobic003G260300--Sobic001G195200 Sobic007G214600--Sobic003G355100 Sobic007G214600--Sobic003G197200 Sobic007G214600--Sobic004G109600 Sobic007G214600--Sobic003G148600 Sobic007G214600--Sobic001G481300 Sobic007G214600--Sobic010G198500 Sobic007G214600--Sobic001G371800 Sobic003G394400 Sobic003G394400 Sobic007G214600--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic007G214600--Sobic004G166200 Sobic003G148600--Sobic003G197200 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic003G148600--Sobic007G214600 Sobic003G148600--Sobic004G166200 Sobic001G107800 Sobic001G107800 Sobic003G148600--Sobic001G107800 Sobic001G405500 Sobic001G405500 Sobic003G148600--Sobic001G405500 Sobic003G148600--Sobic003G394400 Sobic001G105900--Sobic007G147700 Sobic001G105900--Sobic001G443800 Sobic001G105900--Sobic003G197200 Sobic001G105900--Sobic002G291900 Sobic001G190100 Sobic001G190100 Sobic001G105900--Sobic001G190100 Sobic001G105900--Sobic001G201200 Sobic001G105900--Sobic010G198500 Sobic001G105900--Sobic003G148600 Sobic009G148100 Sobic009G148100 Sobic001G105900--Sobic009G148100 Sobic007G213800--Sobic003G144700 Sobic001G391500 Sobic001G391500 Sobic007G213800--Sobic001G391500 Sobic002G282300 Sobic002G282300 Sobic007G213800--Sobic002G282300 Sobic006G230900 Sobic006G230900 Sobic007G213800--Sobic006G230900 Sobic007G213800--Sobic003G197200 Sobic001G138600 Sobic001G138600 Sobic007G213800--Sobic001G138600 Sobic006G231200 Sobic006G231200 Sobic007G213800--Sobic006G231200 Sobic010G209200 Sobic010G209200 Sobic007G213800--Sobic010G209200 Sobic001G459800 Sobic001G459800 Sobic007G213800--Sobic001G459800 Sobic003G355100--Sobic007G214600 Sobic003G355100--Sobic003G197200 Sobic003G355100--Sobic001G481300 Sobic003G355100--Sobic003G148600 Sobic003G355100--Sobic004G109600 Sobic003G355100--Sobic003G394400 Sobic001G108200 Sobic001G108200 Sobic003G355100--Sobic001G108200 Sobic003G355100--Sobic003G144700 Sobic003G355100--Sobic004G166200
Octagon: transcription factors


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