Gene annotation
Transcriptome id Sobic.003G284200.1
Synonym Sb03g033550
Functional annotation expressed protein
UniProt C5XJ08
Pfam PF00266
Panther DB PTHR11601 PTHR11601:SF39
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08490 : chloroplastic NIFS-like cysteine desulfurase
RAP-DB (Rice) LOC_Os01g52900.1 : expressed protein
MaizeGDB (Corn) Zm00025a027713
Brachypodium -
Barley HORVU3Hr1G069210.1
Wheat TraesCS3B02G316300 , TraesCS3A02G282600 , TraesCS3D02G282600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G230600 expressed protein -
2 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G077600 expressed protein -
4 Sobic.004G088300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBK4 - F-box domain and kelch repeat containing protein, expressed -
5 Sobic.001G201200 - -
6 Sobic.004G109800 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
8 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
9 Sobic.001G371800 expressed protein -
10 Sobic.005G086400 hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
11 Sobic.009G123400 - -
12 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.007G214400 EF hand family protein, putative, expressed -
15 Sobic.002G284000 pyridoxal-dependent decarboxylase protein, putative, expressed K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase
16 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
17 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.006G190100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed -
19 Sobic.003G018300 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -


Gene co-expression network
sample Sobic003G284200 Sobic003G284200 Sobic006G230600 Sobic006G230600 Sobic003G284200--Sobic006G230600 Sobic001G076100 Sobic001G076100 Sobic003G284200--Sobic001G076100 Sobic001G077600 Sobic001G077600 Sobic003G284200--Sobic001G077600 Sobic004G088300 Sobic004G088300 Sobic003G284200--Sobic004G088300 Sobic001G201200 Sobic001G201200 Sobic003G284200--Sobic001G201200 Sobic004G109800 Sobic004G109800 Sobic003G284200--Sobic004G109800 Sobic001G443800 Sobic001G443800 Sobic003G284200--Sobic001G443800 Sobic002G389000 Sobic002G389000 Sobic003G284200--Sobic002G389000 Sobic001G371800 Sobic001G371800 Sobic003G284200--Sobic001G371800 Sobic006G230600--Sobic002G389000 Sobic006G230600--Sobic001G371800 Sobic001G107800 Sobic001G107800 Sobic006G230600--Sobic001G107800 Sobic006G230600--Sobic001G076100 Sobic007G214400 Sobic007G214400 Sobic006G230600--Sobic007G214400 Sobic003G394400 Sobic003G394400 Sobic006G230600--Sobic003G394400 Sobic006G230600--Sobic004G088300 Sobic006G230800 Sobic006G230800 Sobic006G230600--Sobic006G230800 Sobic010G031100 Sobic010G031100 Sobic006G230600--Sobic010G031100 Sobic001G076100--Sobic001G201200 Sobic001G076100--Sobic001G443800 Sobic003G123600 Sobic003G123600 Sobic001G076100--Sobic003G123600 Sobic001G076100--Sobic001G371800 Sobic001G076100--Sobic001G107800 Sobic001G076100--Sobic002G389000 Sobic003G148600 Sobic003G148600 Sobic001G076100--Sobic003G148600 Sobic003G197200 Sobic003G197200 Sobic001G076100--Sobic003G197200 Sobic001G076100--Sobic006G230600 Sobic001G077600--Sobic001G201200 Sobic001G077600--Sobic003G284200 Sobic001G077600--Sobic001G443800 Sobic001G259700 Sobic001G259700 Sobic001G077600--Sobic001G259700 Sobic001G077600--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic001G077600--Sobic010G198500 Sobic001G077600--Sobic004G088300 Sobic001G077600--Sobic001G076100 Sobic001G077600--Sobic002G389000 Sobic004G088300--Sobic002G389000 Sobic004G088300--Sobic001G076100 Sobic004G088300--Sobic006G230600 Sobic004G088300--Sobic007G214400 Sobic004G088300--Sobic001G371800 Sobic004G088300--Sobic001G107800 Sobic004G088300--Sobic006G230800 Sobic004G088300--Sobic010G031100 Sobic004G088300--Sobic001G443800 Sobic001G201200--Sobic001G443800 Sobic001G201200--Sobic001G371800 Sobic001G201200--Sobic003G197200 Sobic001G201200--Sobic010G198500 Sobic001G201200--Sobic001G076100 Sobic007G214600 Sobic007G214600 Sobic001G201200--Sobic007G214600 Sobic001G201200--Sobic001G107800 Sobic001G201200--Sobic003G148600 Sobic007G147700 Sobic007G147700 Sobic001G201200--Sobic007G147700 Sobic003G316100 Sobic003G316100 Sobic004G109800--Sobic003G316100 Sobic005G086400 Sobic005G086400 Sobic004G109800--Sobic005G086400 Sobic002G284000 Sobic002G284000 Sobic004G109800--Sobic002G284000 Sobic004G109800--Sobic001G201200 Sobic004G109800--Sobic004G088300 Sobic004G109800--Sobic003G284200 Sobic004G109800--Sobic001G076100 Sobic004G273300 Sobic004G273300 Sobic004G109800--Sobic004G273300 Sobic003G018300 Sobic003G018300 Sobic004G109800--Sobic003G018300 Sobic001G443800--Sobic003G197200 Sobic001G443800--Sobic001G201200 Sobic001G443800--Sobic001G076100 Sobic001G443800--Sobic003G148600 Sobic001G443800--Sobic001G371800 Sobic001G443800--Sobic010G198500 Sobic001G443800--Sobic003G123600 Sobic001G443800--Sobic007G214600 Sobic006G190100 Sobic006G190100 Sobic001G443800--Sobic006G190100 Sobic002G389000--Sobic007G214400 Sobic002G389000--Sobic001G371800 Sobic002G389000--Sobic001G107800 Sobic002G389000--Sobic003G394400 Sobic002G389000--Sobic001G076100 Sobic002G389000--Sobic006G230600 Sobic002G389000--Sobic004G088300 Sobic002G261200 Sobic002G261200 Sobic002G389000--Sobic002G261200 Sobic001G254100 Sobic001G254100 Sobic002G389000--Sobic001G254100 Sobic001G371800--Sobic007G214400 Sobic001G371800--Sobic003G394400 Sobic001G371800--Sobic001G201200 Sobic001G371800--Sobic002G389000 Sobic004G166200 Sobic004G166200 Sobic001G371800--Sobic004G166200 Sobic001G371800--Sobic001G107800 Sobic001G371800--Sobic007G214600 Sobic001G371800--Sobic003G197200 Sobic001G371800--Sobic003G148600
Octagon: transcription factors


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