Gene annotation
Transcriptome id Sobic.001G077600.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6QHT8
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g55776.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G201200 - -
2 Sobic.003G284200 expressed protein -
3 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
4 Sobic.001G259700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
5 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
6 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.004G088300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBK4 - F-box domain and kelch repeat containing protein, expressed -
8 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
10 Sobic.001G371800 expressed protein -
11 Sobic.007G178000 heat shock protein DnaJ, putative, expressed -
12 Sobic.007G147700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
13 Sobic.009G136400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha/beta hydrolase fold, putative, expressed -
14 Sobic.009G141500 Not investigated(PubMedID : 23766026)@"SERF1(Ortholog in rice:Schmidt et al., 2013)"(PubMedID : 31659925)@ethylene-responsive transcription factor ERF020, putative, expressed -
15 Sobic.002G282300 expressed protein -
16 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.007G214600 EF hand family protein, putative, expressed -
18 Sobic.001G481300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
19 Sobic.004G109600 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G077600 Sobic001G077600 Sobic001G201200 Sobic001G201200 Sobic001G077600--Sobic001G201200 Sobic003G284200 Sobic003G284200 Sobic001G077600--Sobic003G284200 Sobic001G443800 Sobic001G443800 Sobic001G077600--Sobic001G443800 Sobic001G259700 Sobic001G259700 Sobic001G077600--Sobic001G259700 Sobic003G197200 Sobic003G197200 Sobic001G077600--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic001G077600--Sobic010G198500 Sobic004G088300 Sobic004G088300 Sobic001G077600--Sobic004G088300 Sobic001G076100 Sobic001G076100 Sobic001G077600--Sobic001G076100 Sobic002G389000 Sobic002G389000 Sobic001G077600--Sobic002G389000 Sobic001G201200--Sobic001G443800 Sobic001G371800 Sobic001G371800 Sobic001G201200--Sobic001G371800 Sobic001G201200--Sobic003G197200 Sobic001G201200--Sobic010G198500 Sobic001G201200--Sobic001G076100 Sobic007G214600 Sobic007G214600 Sobic001G201200--Sobic007G214600 Sobic001G107800 Sobic001G107800 Sobic001G201200--Sobic001G107800 Sobic003G148600 Sobic003G148600 Sobic001G201200--Sobic003G148600 Sobic007G147700 Sobic007G147700 Sobic001G201200--Sobic007G147700 Sobic006G230600 Sobic006G230600 Sobic003G284200--Sobic006G230600 Sobic003G284200--Sobic001G076100 Sobic003G284200--Sobic001G077600 Sobic003G284200--Sobic004G088300 Sobic003G284200--Sobic001G201200 Sobic004G109800 Sobic004G109800 Sobic003G284200--Sobic004G109800 Sobic003G284200--Sobic001G443800 Sobic003G284200--Sobic002G389000 Sobic003G284200--Sobic001G371800 Sobic001G443800--Sobic003G197200 Sobic001G443800--Sobic001G201200 Sobic001G443800--Sobic001G076100 Sobic001G443800--Sobic003G148600 Sobic001G443800--Sobic001G371800 Sobic001G443800--Sobic010G198500 Sobic003G123600 Sobic003G123600 Sobic001G443800--Sobic003G123600 Sobic001G443800--Sobic007G214600 Sobic006G190100 Sobic006G190100 Sobic001G443800--Sobic006G190100 Sobic006G263600 Sobic006G263600 Sobic001G259700--Sobic006G263600 Sobic009G141500 Sobic009G141500 Sobic001G259700--Sobic009G141500 Sobic001G259600 Sobic001G259600 Sobic001G259700--Sobic001G259600 Sobic002G328400 Sobic002G328400 Sobic001G259700--Sobic002G328400 Sobic004G169200 Sobic004G169200 Sobic001G259700--Sobic004G169200 Sobic004G191400 Sobic004G191400 Sobic001G259700--Sobic004G191400 Sobic001G449700 Sobic001G449700 Sobic001G259700--Sobic001G449700 Sobic002G405600 Sobic002G405600 Sobic001G259700--Sobic002G405600 Sobic001G079300 Sobic001G079300 Sobic001G259700--Sobic001G079300 Sobic003G197200--Sobic003G148600 Sobic003G197200--Sobic007G214600 Sobic003G355100 Sobic003G355100 Sobic003G197200--Sobic003G355100 Sobic003G144700 Sobic003G144700 Sobic003G197200--Sobic003G144700 Sobic003G197200--Sobic001G443800 Sobic001G481300 Sobic001G481300 Sobic003G197200--Sobic001G481300 Sobic003G197200--Sobic001G201200 Sobic004G109600 Sobic004G109600 Sobic003G197200--Sobic004G109600 Sobic003G197200--Sobic003G123600 Sobic010G198500--Sobic007G214600 Sobic010G198500--Sobic001G201200 Sobic010G198500--Sobic003G197200 Sobic010G198500--Sobic007G147700 Sobic010G198500--Sobic001G443800 Sobic010G198500--Sobic004G109600 Sobic010G198500--Sobic001G371800 Sobic010G198500--Sobic003G355100 Sobic010G198500--Sobic001G481300 Sobic004G088300--Sobic002G389000 Sobic004G088300--Sobic001G076100 Sobic004G088300--Sobic006G230600 Sobic007G214400 Sobic007G214400 Sobic004G088300--Sobic007G214400 Sobic004G088300--Sobic001G371800 Sobic004G088300--Sobic001G107800 Sobic006G230800 Sobic006G230800 Sobic004G088300--Sobic006G230800 Sobic010G031100 Sobic010G031100 Sobic004G088300--Sobic010G031100 Sobic004G088300--Sobic001G443800 Sobic001G076100--Sobic001G201200 Sobic001G076100--Sobic001G443800 Sobic001G076100--Sobic003G123600 Sobic001G076100--Sobic001G371800 Sobic001G076100--Sobic001G107800 Sobic001G076100--Sobic002G389000 Sobic001G076100--Sobic003G148600 Sobic001G076100--Sobic003G197200 Sobic001G076100--Sobic006G230600 Sobic002G389000--Sobic007G214400 Sobic002G389000--Sobic001G371800 Sobic002G389000--Sobic001G107800 Sobic003G394400 Sobic003G394400 Sobic002G389000--Sobic003G394400 Sobic002G389000--Sobic001G076100 Sobic002G389000--Sobic006G230600 Sobic002G389000--Sobic004G088300 Sobic002G261200 Sobic002G261200 Sobic002G389000--Sobic002G261200 Sobic001G254100 Sobic001G254100 Sobic002G389000--Sobic001G254100
Octagon: transcription factors


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