Gene annotation
Transcriptome id Sobic.001G259700.1
Synonym JAZ11, JAZ, Sb01g023330, TIFY3A
Functional annotation tran- scriptional repressor JASMONATE ZIM-DOMAIN (PubMedID : 25711704)
ZIM domain containing protein, putative, expressed
UniProt A0A1B6QL45
Pfam PF09425 PF06200
Panther DB PTHR33077 PTHR33077:SF15
NCBI CDD -
KEGG Orthology K13464; jasmonate ZIM domain-containing protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G43440 : jasmonate-zim-domain protein 11
RAP-DB (Rice) LOC_Os10g25230.1 : ZIM domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017880 , Zm00025a007060
Brachypodium KQJ96454
Barley HORVU7Hr1G041260.2 , HORVU7Hr1G041260.3 , HORVU7Hr1G041260.1 , HORVU7Hr1G041260.6 , HORVU7Hr1G041260.4 , HORVU7Hr1G041260.5 , HORVU7Hr1G041230.5 , HORVU7Hr1G041230.3 , HORVU7Hr1G041230.2 , HORVU7Hr1G041230.4 , HORVU7Hr1G041270.1 , HORVU7Hr1G041300.1 , HORVU7Hr1G041230.1
Wheat TraesCS7A02G201500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.009G141500 Not investigated(PubMedID : 23766026)@"SERF1(Ortholog in rice:Schmidt et al., 2013)"(PubMedID : 31659925)@ethylene-responsive transcription factor ERF020, putative, expressed -
3 Sobic.001G259600 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
4 Sobic.002G328400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed -
5 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
6 Sobic.004G191400 - -
7 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
8 Sobic.002G405600 early response to dehydration 15, putative, expressed -
9 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
11 Sobic.003G202200 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
12 Sobic.001G383700 OsCML27 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
13 Sobic.010G209200 WRKY28, expressed -
14 Sobic.001G259900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
15 Sobic.002G282300 expressed protein -
16 Sobic.001G138600 VQ domain containing protein, putative, expressed -
17 Sobic.001G295700 Triacylglycerol lipase like protein (Os)(PubMedID : 27208977)@triacylglycerol lipase like protein, putative, expressed -
18 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
19 Sobic.003G428700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.009G192600 Protein tyrosine/DOPA decarboxylase 1 (Os)(PubMedID : 27208977)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase


Gene co-expression network
sample Sobic001G259700 Sobic001G259700 Sobic006G263600 Sobic006G263600 Sobic001G259700--Sobic006G263600 Sobic009G141500 Sobic009G141500 Sobic001G259700--Sobic009G141500 Sobic001G259600 Sobic001G259600 Sobic001G259700--Sobic001G259600 Sobic002G328400 Sobic002G328400 Sobic001G259700--Sobic002G328400 Sobic004G169200 Sobic004G169200 Sobic001G259700--Sobic004G169200 Sobic004G191400 Sobic004G191400 Sobic001G259700--Sobic004G191400 Sobic001G449700 Sobic001G449700 Sobic001G259700--Sobic001G449700 Sobic002G405600 Sobic002G405600 Sobic001G259700--Sobic002G405600 Sobic001G079300 Sobic001G079300 Sobic001G259700--Sobic001G079300 Sobic006G263600--Sobic001G259700 Sobic006G263600--Sobic004G169200 Sobic009G247900 Sobic009G247900 Sobic006G263600--Sobic009G247900 Sobic009G036000 Sobic009G036000 Sobic006G263600--Sobic009G036000 Sobic001G383700 Sobic001G383700 Sobic006G263600--Sobic001G383700 Sobic003G324400 Sobic003G324400 Sobic006G263600--Sobic003G324400 Sobic007G213800 Sobic007G213800 Sobic006G263600--Sobic007G213800 Sobic006G263600--Sobic001G079300 Sobic002G282300 Sobic002G282300 Sobic006G263600--Sobic002G282300 Sobic001G259900 Sobic001G259900 Sobic009G141500--Sobic001G259900 Sobic009G141500--Sobic001G259700 Sobic009G141500--Sobic002G328400 Sobic009G141500--Sobic001G079300 Sobic009G141500--Sobic004G191400 Sobic001G138600 Sobic001G138600 Sobic009G141500--Sobic001G138600 Sobic005G186100 Sobic005G186100 Sobic009G141500--Sobic005G186100 Sobic009G141500--Sobic004G169200 Sobic006G007900 Sobic006G007900 Sobic009G141500--Sobic006G007900 Sobic001G259600--Sobic001G259700 Sobic003G313800 Sobic003G313800 Sobic001G259600--Sobic003G313800 Sobic010G209100 Sobic010G209100 Sobic001G259600--Sobic010G209100 Sobic001G259600--Sobic002G282300 Sobic001G259600--Sobic006G263600 Sobic001G259600--Sobic007G213800 Sobic001G259600--Sobic003G324400 Sobic001G259600--Sobic004G169200 Sobic005G037000 Sobic005G037000 Sobic001G259600--Sobic005G037000 Sobic002G328400--Sobic009G141500 Sobic002G328400--Sobic001G259700 Sobic003G265200 Sobic003G265200 Sobic002G328400--Sobic003G265200 Sobic002G328400--Sobic004G191400 Sobic003G260300 Sobic003G260300 Sobic002G328400--Sobic003G260300 Sobic002G328400--Sobic004G169200 Sobic002G328400--Sobic001G079300 Sobic002G328400--Sobic006G263600 Sobic001G431500 Sobic001G431500 Sobic002G328400--Sobic001G431500 Sobic002G395300 Sobic002G395300 Sobic004G169200--Sobic002G395300 Sobic002G358300 Sobic002G358300 Sobic004G169200--Sobic002G358300 Sobic003G428700 Sobic003G428700 Sobic004G169200--Sobic003G428700 Sobic004G169200--Sobic006G263600 Sobic004G169200--Sobic004G191400 Sobic009G122400 Sobic009G122400 Sobic004G169200--Sobic009G122400 Sobic010G209200 Sobic010G209200 Sobic004G169200--Sobic010G209200 Sobic002G220000 Sobic002G220000 Sobic004G169200--Sobic002G220000 Sobic002G339000 Sobic002G339000 Sobic004G169200--Sobic002G339000 Sobic004G191300 Sobic004G191300 Sobic004G191400--Sobic004G191300 Sobic004G191400--Sobic001G079300 Sobic004G191400--Sobic009G122400 Sobic004G191400--Sobic010G209200 Sobic007G122800 Sobic007G122800 Sobic004G191400--Sobic007G122800 Sobic003G228900 Sobic003G228900 Sobic004G191400--Sobic003G228900 Sobic004G308900 Sobic004G308900 Sobic004G191400--Sobic004G308900 Sobic004G191400--Sobic003G428700 Sobic004G294400 Sobic004G294400 Sobic004G191400--Sobic004G294400 Sobic001G449700--Sobic001G383700 Sobic003G202200 Sobic003G202200 Sobic001G449700--Sobic003G202200 Sobic003G110200 Sobic003G110200 Sobic001G449700--Sobic003G110200 Sobic007G149300 Sobic007G149300 Sobic001G449700--Sobic007G149300 Sobic003G021500 Sobic003G021500 Sobic001G449700--Sobic003G021500 Sobic001G449700--Sobic009G036000 Sobic002G333400 Sobic002G333400 Sobic001G449700--Sobic002G333400 Sobic001G449700--Sobic001G259700 Sobic001G449700--Sobic005G186100 Sobic002G245800 Sobic002G245800 Sobic002G405600--Sobic002G245800 Sobic002G405600--Sobic003G324400 Sobic002G405600--Sobic003G202200 Sobic010G204600 Sobic010G204600 Sobic002G405600--Sobic010G204600 Sobic002G405600--Sobic009G247900 Sobic010G267600 Sobic010G267600 Sobic002G405600--Sobic010G267600 Sobic002G405600--Sobic006G263600 Sobic002G405600--Sobic001G259700 Sobic001G095300 Sobic001G095300 Sobic002G405600--Sobic001G095300 Sobic001G079300--Sobic004G191400 Sobic001G079300--Sobic004G191300 Sobic001G079300--Sobic010G209200 Sobic001G079300--Sobic003G228900 Sobic001G079300--Sobic001G138600 Sobic001G079300--Sobic009G122400 Sobic001G079300--Sobic003G260300 Sobic004G141200 Sobic004G141200 Sobic001G079300--Sobic004G141200 Sobic009G184000 Sobic009G184000 Sobic001G079300--Sobic009G184000
Octagon: transcription factors


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