Gene annotation
| Transcriptome id | Sobic.001G449700.1 |
|---|---|
| Synonym | Sb01g042270, allene oxide synthase, AOS, DDE2, CYP74A, AOS |
| Functional annotation | highly upregulated during chilling in a chilling tolerant sorghum NSG (PubMedID : 29293808) cytochrome P450, putative, expressed |
| UniProt | A0A1Z5SAM0 |
| Pfam | PF00067 |
| Panther DB | PTHR24286 PTHR24286:SF50 |
| NCBI CDD | - |
| KEGG Orthology | K01723; hydroperoxide dehydratase |
| Gene Ontology | GO:0016705; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0005506iron ion binding |
Orthologs (automatic annotation)
| TAIR | AT5G42650 : allene oxide synthase |
|---|---|
| RAP-DB (Rice) | LOC_Os03g12500.1 : cytochrome P450, putative, expressed |
| MaizeGDB (Corn) | Zm00025a053001 , Zm00025a001393 |
| Brachypodium | KQK22780 |
| Barley | HORVU4Hr1G066270.5 , HORVU4Hr1G066270.4 , HORVU4Hr1G066270.7 , HORVU4Hr1G066270.6 , HORVU4Hr1G066270.1 , HORVU4Hr1G066270.3 , HORVU4Hr1G066270.2 , HORVU4Hr1G066270.8 , HORVU4Hr1G066230.1 , HORVU4Hr1G066230.3 , HORVU4Hr1G066230.2 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.001G449700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G383700 | OsCML27 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 2 | Sobic.003G202200 | uncharacterized protein PA4923, putative, expressed | K06966: pyrimidine/purine-5'-nucleotide nucleosidase |
| 3 | Sobic.003G110200 | NADP-dependent oxidoreductase, putative, expressed | K07119: PTGR3, prostaglandin reductase 3 |
| 4 | Sobic.007G149300 | expressed protein | - |
| 5 | Sobic.003G021500 | sodium/calcium exchanger protein, putative, expressed | - |
| 6 | Sobic.009G036000 | similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed | - |
| 7 | Sobic.002G333400 | KI domain interacting kinase 1, putative, expressed | - |
| 8 | Sobic.001G259700 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 9 | Sobic.005G186100 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed | - |
| 10 | Sobic.001G481100 | DUF581 domain containing protein, expressed | - |
| 11 | Sobic.007G123300 | C1-like domain containing protein, expressed | - |
| 12 | Sobic.003G102200 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
| 13 | Sobic.009G247900 | similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed | - |
| 14 | Sobic.002G373001 | - | - |
| 15 | Sobic.006G263600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 16 | Sobic.004G169200 | U-box domain-containing protein, putative, expressed | - |
| 17 | Sobic.002G395300 | gibberellin receptor GID1L2, putative, expressed | - |
| 18 | Sobic.010G267600 | similar to Putative senescence-associated protein(PubMedID : 29862293)@senescence-associated protein, putative, expressed | - |
| 19 | Sobic.003G364600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed | - |
| 20 | Sobic.002G328400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed | - |
Gene co-expression network
Octagon: transcription factors
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