Gene annotation
Transcriptome id Sobic.003G110200.1
Synonym Sb03g009270
Functional annotation NADP-dependent oxidoreductase, putative, expressed
UniProt C5XFP2
Pfam PF00107 PF16884
Panther DB PTHR11695 PTHR11695:SF564
NCBI CDD KOG1196; Predicted NAD-dependent oxidoreductase
KEGG Orthology K07119; PTGR3, prostaglandin reductase 3
Gene Ontology GO:0016491; oxidoreductase activity GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G03080 : Zinc-binding dehydrogenase family protein
RAP-DB (Rice) LOC_Os04g41960.1 : NADP-dependent oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a035375 , Zm00025a015602
Brachypodium KQJ91825 , KQK10987 , PNT75680 , PNT75681 , KQK17771 , PNT73357 , KQJ88705
Barley HORVU3Hr1G015640.5 , HORVU3Hr1G015640.4 , HORVU3Hr1G015640.7 , HORVU3Hr1G015640.6 , HORVU3Hr1G015640.1 , HORVU3Hr1G015640.3 , HORVU3Hr1G015640.2 , HORVU3Hr1G090050.3 , HORVU3Hr1G090050.2 , HORVU3Hr1G090050.1 , HORVU3Hr1G090050.15 , HORVU3Hr1G090050.14 , HORVU3Hr1G090050.13 , HORVU3Hr1G090050.12 , HORVU3Hr1G090050.11 , HORVU3Hr1G090050.10 , HORVU3Hr1G015680.1 , HORVU3Hr1G015680.3 , HORVU3Hr1G015680.2 , HORVU3Hr1G090050.41 , HORVU3Hr1G090050.48 , HORVU3Hr1G090050.49 , HORVU2Hr1G115460.6 , HORVU2Hr1G115460.4 , HORVU2Hr1G115460.2 , HORVU2Hr1G115460.1 , HORVU3Hr1G090050.31 , HORVU3Hr1G090050.32 , HORVU3Hr1G090050.35 , HORVU3Hr1G090050.34 , HORVU3Hr1G090050.37 , HORVU3Hr1G090050.36 , HORVU3Hr1G090050.39 , HORVU3Hr1G090050.38 , HORVU3Hr1G090050.53 , HORVU3Hr1G090050.52 , HORVU3Hr1G090050.51 , HORVU3Hr1G090050.56 , HORVU3Hr1G090050.54 , HORVU3Hr1G090050.26 , HORVU3Hr1G090050.24 , HORVU3Hr1G090050.25 , HORVU3Hr1G090050.22 , HORVU3Hr1G090050.28 , HORVU3Hr1G090050.45 , HORVU3Hr1G090050.47 , HORVU3Hr1G090120.3 , HORVU3Hr1G090120.2 , HORVU3Hr1G090120.1
Wheat TraesCS3D02G396000 , TraesCS5D02G310600 , TraesCS5A02G303400 , TraesCS3B02G434300 , TraesCS3A02G401400 , TraesCS3D02G396200 , TraesCS3B02G102600 , TraesCS5D02G310500 , TraesCS5B02G303800
Populus -


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cDNA sequences
Sobic.003G110200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
2 Sobic.003G202200 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
3 Sobic.007G149300 expressed protein -
4 Sobic.002G092801 - -
5 Sobic.003G102200 helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.001G383700 OsCML27 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
7 Sobic.001G481100 DUF581 domain containing protein, expressed -
8 Sobic.003G021500 sodium/calcium exchanger protein, putative, expressed -
9 Sobic.005G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed -
10 Sobic.001G234800 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
11 Sobic.001G192600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
12 Sobic.003G049700 glyoxalase family protein, putative, expressed -
13 Sobic.010G267600 similar to Putative senescence-associated protein(PubMedID : 29862293)@senescence-associated protein, putative, expressed -
14 Sobic.007G123300 C1-like domain containing protein, expressed -
15 Sobic.003G254900 no apical meristem protein, putative, expressed -
16 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
17 Sobic.001G536500 expressed protein -
18 Sobic.003G037500 WRKY107, expressed -
19 Sobic.001G390300 OsCam1-1 - Calmodulin, expressed K02183: calmodulin
20 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -


Gene co-expression network
sample Sobic003G110200 Sobic003G110200 Sobic001G449700 Sobic001G449700 Sobic003G110200--Sobic001G449700 Sobic003G202200 Sobic003G202200 Sobic003G110200--Sobic003G202200 Sobic007G149300 Sobic007G149300 Sobic003G110200--Sobic007G149300 Sobic002G092801 Sobic002G092801 Sobic003G110200--Sobic002G092801 Sobic003G102200 Sobic003G102200 Sobic003G110200--Sobic003G102200 Sobic001G383700 Sobic001G383700 Sobic003G110200--Sobic001G383700 Sobic001G481100 Sobic001G481100 Sobic003G110200--Sobic001G481100 Sobic003G021500 Sobic003G021500 Sobic003G110200--Sobic003G021500 Sobic005G186100 Sobic005G186100 Sobic003G110200--Sobic005G186100 Sobic001G449700--Sobic001G383700 Sobic001G449700--Sobic003G202200 Sobic001G449700--Sobic003G110200 Sobic001G449700--Sobic007G149300 Sobic001G449700--Sobic003G021500 Sobic009G036000 Sobic009G036000 Sobic001G449700--Sobic009G036000 Sobic002G333400 Sobic002G333400 Sobic001G449700--Sobic002G333400 Sobic001G259700 Sobic001G259700 Sobic001G449700--Sobic001G259700 Sobic001G449700--Sobic005G186100 Sobic003G202200--Sobic001G481100 Sobic009G247900 Sobic009G247900 Sobic003G202200--Sobic009G247900 Sobic003G202200--Sobic001G383700 Sobic003G202200--Sobic001G449700 Sobic003G202200--Sobic003G021500 Sobic003G228900 Sobic003G228900 Sobic003G202200--Sobic003G228900 Sobic004G191400 Sobic004G191400 Sobic003G202200--Sobic004G191400 Sobic003G364600 Sobic003G364600 Sobic003G202200--Sobic003G364600 Sobic003G202200--Sobic009G036000 Sobic007G149300--Sobic001G383700 Sobic007G149300--Sobic001G449700 Sobic007G149300--Sobic003G202200 Sobic010G267600 Sobic010G267600 Sobic007G149300--Sobic010G267600 Sobic007G149300--Sobic009G247900 Sobic007G149300--Sobic004G191400 Sobic007G149300--Sobic003G110200 Sobic007G149300--Sobic001G481100 Sobic009G122400 Sobic009G122400 Sobic007G149300--Sobic009G122400 Sobic002G092801--Sobic003G110200 Sobic002G092801--Sobic001G449700 Sobic002G092801--Sobic003G102200 Sobic002G092801--Sobic003G021500 Sobic002G092801--Sobic001G383700 Sobic007G123300 Sobic007G123300 Sobic002G092801--Sobic007G123300 Sobic002G092801--Sobic003G202200 Sobic002G034500 Sobic002G034500 Sobic002G092801--Sobic002G034500 Sobic002G092801--Sobic007G149300 Sobic003G102200--Sobic001G449700 Sobic003G102200--Sobic003G110200 Sobic001G195100 Sobic001G195100 Sobic003G102200--Sobic001G195100 Sobic003G102200--Sobic001G259700 Sobic003G102200--Sobic001G383700 Sobic003G102200--Sobic007G149300 Sobic002G342400 Sobic002G342400 Sobic003G102200--Sobic002G342400 Sobic002G373001 Sobic002G373001 Sobic003G102200--Sobic002G373001 Sobic003G250600 Sobic003G250600 Sobic003G102200--Sobic003G250600 Sobic001G383700--Sobic003G202200 Sobic001G383700--Sobic009G247900 Sobic001G383700--Sobic001G449700 Sobic001G383700--Sobic007G149300 Sobic001G383700--Sobic009G036000 Sobic006G263600 Sobic006G263600 Sobic001G383700--Sobic006G263600 Sobic004G169200 Sobic004G169200 Sobic001G383700--Sobic004G169200 Sobic001G383700--Sobic004G191400 Sobic002G395300 Sobic002G395300 Sobic001G383700--Sobic002G395300 Sobic001G481100--Sobic003G228900 Sobic006G075400 Sobic006G075400 Sobic001G481100--Sobic006G075400 Sobic001G318700 Sobic001G318700 Sobic001G481100--Sobic001G318700 Sobic007G074000 Sobic007G074000 Sobic001G481100--Sobic007G074000 Sobic001G256700 Sobic001G256700 Sobic001G481100--Sobic001G256700 Sobic001G481100--Sobic003G202200 Sobic001G079300 Sobic001G079300 Sobic001G481100--Sobic001G079300 Sobic004G301000 Sobic004G301000 Sobic001G481100--Sobic004G301000 Sobic002G251000 Sobic002G251000 Sobic001G481100--Sobic002G251000 Sobic003G021500--Sobic003G364600 Sobic003G021500--Sobic003G202200 Sobic003G021500--Sobic001G449700 Sobic003G021500--Sobic009G036000 Sobic003G320800 Sobic003G320800 Sobic003G021500--Sobic003G320800 Sobic003G021500--Sobic001G383700 Sobic003G021500--Sobic002G034500 Sobic002G082600 Sobic002G082600 Sobic003G021500--Sobic002G082600 Sobic002G312400 Sobic002G312400 Sobic003G021500--Sobic002G312400 Sobic001G138600 Sobic001G138600 Sobic005G186100--Sobic001G138600 Sobic001G112200 Sobic001G112200 Sobic005G186100--Sobic001G112200 Sobic006G056400 Sobic006G056400 Sobic005G186100--Sobic006G056400 Sobic005G186100--Sobic002G333400 Sobic005G186100--Sobic001G318700 Sobic005G186100--Sobic003G228900 Sobic005G186100--Sobic001G481100 Sobic005G186100--Sobic001G079300 Sobic009G184000 Sobic009G184000 Sobic005G186100--Sobic009G184000
Octagon: transcription factors


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