Gene annotation
| Transcriptome id | Sobic.003G021500.1,Sobic.003G021500.2 |
|---|---|
| Synonym | Sb03g002020 |
| Functional annotation | sodium/calcium exchanger protein, putative, expressed |
| UniProt | A0A1B6Q109 , A0A1B6Q0X8 |
| Pfam | PF01699 |
| Panther DB | PTHR10891 PTHR10891:SF633 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT1G53210 : sodium/calcium exchanger family protein / calcium-binding EF hand family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g11414.1 : sodium/calcium exchanger protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a021264 , Zm00025a022930 , Zm00025a035890 |
| Brachypodium | KQK03282 |
| Barley | HORVU3Hr1G028540.1 , HORVU3Hr1G028540.2 |
| Wheat | TraesCS3D02G148000 , TraesCS3B02G165400 , TraesCS7A02G105900 |
| Populus | - |
JBrowse
| Sobic.003G021500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G364600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed | - |
| 2 | Sobic.003G202200 | uncharacterized protein PA4923, putative, expressed | K06966: pyrimidine/purine-5'-nucleotide nucleosidase |
| 3 | Sobic.001G449700 | highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed | K01723: hydroperoxide dehydratase |
| 4 | Sobic.009G036000 | similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed | - |
| 5 | Sobic.003G320800 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 6 | Sobic.001G383700 | OsCML27 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 7 | Sobic.002G034500 | ERD4 protein, putative, expressed | - |
| 8 | Sobic.002G082600 | DUF567 domain containing protein, putative, expressed | - |
| 9 | Sobic.002G312400 | domain of unknown function domain containing protein, expressed | - |
| 10 | Sobic.007G123300 | C1-like domain containing protein, expressed | - |
| 11 | Sobic.009G247900 | similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed | - |
| 12 | Sobic.001G481100 | DUF581 domain containing protein, expressed | - |
| 13 | Sobic.007G036900 | triacylglycerol lipase like protein, putative, expressed | - |
| 14 | Sobic.010G204600 | SNF7 domain containing protein, putative, expressed | K12197: CHMP1, VPS46, charged multivesicular body protein 1 |
| 15 | Sobic.010G267600 | similar to Putative senescence-associated protein(PubMedID : 29862293)@senescence-associated protein, putative, expressed | - |
| 16 | Sobic.001G308300 | expressed protein | - |
| 17 | Sobic.004G301000 | B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed | - |
| 18 | Sobic.001G055600 | prenylated rab acceptor, putative, expressed | - |
| 19 | Sobic.007G155000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed | K01674: carbonic anhydrase |
| 20 | Sobic.007G074000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- | - |
Gene co-expression network
Octagon: transcription factors
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