Gene annotation
Transcriptome id Sobic.002G312400.1
Synonym Sb02g034200
Functional annotation domain of unknown function domain containing protein, expressed
UniProt C5X9C4
Pfam PF03619
Panther DB PTHR23423 PTHR23423:SF15
NCBI CDD KOG2641; Predicted seven transmembrane receptor - rhodopsin family
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21570 : Protein of unknown function (DUF300)
RAP-DB (Rice) LOC_Os07g32230.1 : domain of unknown function domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048157
Brachypodium KQK11583 , KQK18227
Barley HORVU2Hr1G048220.1 , HORVU2Hr1G048220.2 , HORVU2Hr1G048220.3 , HORVU2Hr1G048220.4 , HORVU2Hr1G048220.6 , HORVU2Hr1G048220.7 , HORVU2Hr1G086990.1 , HORVU2Hr1G086990.2 , HORVU2Hr1G086990.3 , HORVU2Hr1G086990.4 , HORVU2Hr1G086990.5 , HORVU2Hr1G086990.6
Wheat TraesCSU02G015600 , TraesCS2D02G232700 , TraesCS2D02G232700 , TraesCS2B02G376800 , TraesCS2A02G357600 , TraesCS2A02G232800 , TraesCS2D02G356400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G312400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G281400 expressed protein -
2 Sobic.001G499300 high-affinity nickel-transport family protein, putative, expressed -
3 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
4 Sobic.004G332900 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
5 Sobic.002G211900 zinc finger, C3HC4 type domain containing protein, expressed K16274: E3 ubiquitin-protein ligase AIP2
6 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
7 Sobic.002G082600 DUF567 domain containing protein, putative, expressed -
8 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
9 Sobic.004G177700 AIG1, putative, expressed -
10 Sobic.001G308300 expressed protein -
11 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
12 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
13 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
14 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
15 Sobic.003G021500 sodium/calcium exchanger protein, putative, expressed -
16 Sobic.009G141800 cytochrome c, putative, expressed K08738: cytochrome c
17 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
18 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.010G086200 GRAM domain containing protein, expressed -
20 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -


Gene co-expression network
sample Sobic002G312400 Sobic002G312400 Sobic001G281400 Sobic001G281400 Sobic002G312400--Sobic001G281400 Sobic001G499300 Sobic001G499300 Sobic002G312400--Sobic001G499300 Sobic004G187900 Sobic004G187900 Sobic002G312400--Sobic004G187900 Sobic004G332900 Sobic004G332900 Sobic002G312400--Sobic004G332900 Sobic002G211900 Sobic002G211900 Sobic002G312400--Sobic002G211900 Sobic006G173900 Sobic006G173900 Sobic002G312400--Sobic006G173900 Sobic002G082600 Sobic002G082600 Sobic002G312400--Sobic002G082600 Sobic009G023200 Sobic009G023200 Sobic002G312400--Sobic009G023200 Sobic004G177700 Sobic004G177700 Sobic002G312400--Sobic004G177700 Sobic001G281400--Sobic004G187900 Sobic002G267500 Sobic002G267500 Sobic001G281400--Sobic002G267500 Sobic010G149300 Sobic010G149300 Sobic001G281400--Sobic010G149300 Sobic002G190900 Sobic002G190900 Sobic001G281400--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic001G281400--Sobic002G046100 Sobic010G086200 Sobic010G086200 Sobic001G281400--Sobic010G086200 Sobic009G141800 Sobic009G141800 Sobic001G281400--Sobic009G141800 Sobic009G008900 Sobic009G008900 Sobic001G281400--Sobic009G008900 Sobic001G281400--Sobic001G499300 Sobic001G499300--Sobic001G281400 Sobic001G499300--Sobic009G008900 Sobic001G177800 Sobic001G177800 Sobic001G499300--Sobic001G177800 Sobic001G499300--Sobic004G187900 Sobic001G459200 Sobic001G459200 Sobic001G499300--Sobic001G459200 Sobic001G499300--Sobic006G173900 Sobic001G393500 Sobic001G393500 Sobic001G499300--Sobic001G393500 Sobic001G499300--Sobic002G312400 Sobic001G477300 Sobic001G477300 Sobic001G499300--Sobic001G477300 Sobic004G187900--Sobic001G281400 Sobic001G124600 Sobic001G124600 Sobic004G187900--Sobic001G124600 Sobic002G140400 Sobic002G140400 Sobic004G187900--Sobic002G140400 Sobic004G187900--Sobic009G141800 Sobic004G321300 Sobic004G321300 Sobic004G187900--Sobic004G321300 Sobic003G350300 Sobic003G350300 Sobic004G187900--Sobic003G350300 Sobic004G187900--Sobic009G008900 Sobic004G187900--Sobic001G477300 Sobic008G136400 Sobic008G136400 Sobic004G187900--Sobic008G136400 Sobic004G332900--Sobic002G312400 Sobic004G332900--Sobic001G499300 Sobic001G034700 Sobic001G034700 Sobic004G332900--Sobic001G034700 Sobic003G357300 Sobic003G357300 Sobic004G332900--Sobic003G357300 Sobic001G351000 Sobic001G351000 Sobic004G332900--Sobic001G351000 Sobic010G041600 Sobic010G041600 Sobic004G332900--Sobic010G041600 Sobic010G178200 Sobic010G178200 Sobic004G332900--Sobic010G178200 Sobic004G332900--Sobic001G459200 Sobic003G285800 Sobic003G285800 Sobic004G332900--Sobic003G285800 Sobic003G249800 Sobic003G249800 Sobic002G211900--Sobic003G249800 Sobic001G015100 Sobic001G015100 Sobic002G211900--Sobic001G015100 Sobic003G181500 Sobic003G181500 Sobic002G211900--Sobic003G181500 Sobic002G211900--Sobic004G177700 Sobic002G211900--Sobic002G046100 Sobic002G211900--Sobic001G477300 Sobic002G211900--Sobic002G312400 Sobic001G095300 Sobic001G095300 Sobic002G211900--Sobic001G095300 Sobic001G308300 Sobic001G308300 Sobic002G211900--Sobic001G308300 Sobic006G173900--Sobic009G008900 Sobic010G099900 Sobic010G099900 Sobic006G173900--Sobic010G099900 Sobic002G393000 Sobic002G393000 Sobic006G173900--Sobic002G393000 Sobic006G275200 Sobic006G275200 Sobic006G173900--Sobic006G275200 Sobic006G173900--Sobic008G136400 Sobic002G414600 Sobic002G414600 Sobic006G173900--Sobic002G414600 Sobic001G119400 Sobic001G119400 Sobic006G173900--Sobic001G119400 Sobic001G423800 Sobic001G423800 Sobic006G173900--Sobic001G423800 Sobic006G173900--Sobic004G177700 Sobic009G036000 Sobic009G036000 Sobic002G082600--Sobic009G036000 Sobic009G036100 Sobic009G036100 Sobic002G082600--Sobic009G036100 Sobic009G159400 Sobic009G159400 Sobic002G082600--Sobic009G159400 Sobic001G320900 Sobic001G320900 Sobic002G082600--Sobic001G320900 Sobic004G065500 Sobic004G065500 Sobic002G082600--Sobic004G065500 Sobic003G387000 Sobic003G387000 Sobic002G082600--Sobic003G387000 Sobic001G407800 Sobic001G407800 Sobic002G082600--Sobic001G407800 Sobic003G334600 Sobic003G334600 Sobic002G082600--Sobic003G334600 Sobic002G082600--Sobic010G086200 Sobic009G023200--Sobic004G187900 Sobic010G204600 Sobic010G204600 Sobic009G023200--Sobic010G204600 Sobic003G063200 Sobic003G063200 Sobic009G023200--Sobic003G063200 Sobic001G067601 Sobic001G067601 Sobic009G023200--Sobic001G067601 Sobic009G023200--Sobic002G046100 Sobic002G245800 Sobic002G245800 Sobic009G023200--Sobic002G245800 Sobic009G023200--Sobic003G181500 Sobic003G202200 Sobic003G202200 Sobic009G023200--Sobic003G202200 Sobic005G196800 Sobic005G196800 Sobic009G023200--Sobic005G196800 Sobic004G177700--Sobic006G173900 Sobic004G177700--Sobic002G393000 Sobic004G177700--Sobic006G275200 Sobic004G177700--Sobic010G099900 Sobic004G177700--Sobic009G008900 Sobic004G177700--Sobic010G086200 Sobic004G177700--Sobic010G149300 Sobic006G230500 Sobic006G230500 Sobic004G177700--Sobic006G230500 Sobic004G177700--Sobic002G414600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.