Gene annotation
Transcriptome id Sobic.001G499300.1
Synonym Sb01g046640
Functional annotation high-affinity nickel-transport family protein, putative, expressed
UniProt C5WXT5
Pfam PF13386
Panther DB PTHR33876 PTHR33876:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G35080 : high-affinity nickel-transport family protein
RAP-DB (Rice) LOC_Os03g06090.1 : high-affinity nickel-transport family protein, putative, expressed
MaizeGDB (Corn) Zm00025a000717
Brachypodium KQK23572
Barley HORVU4Hr1G072520.5 , HORVU4Hr1G072520.6 , HORVU4Hr1G072520.3 , HORVU4Hr1G072520.4 , HORVU4Hr1G072520.7 , HORVU4Hr1G072520.1 , HORVU4Hr1G072520.2 , HORVU4Hr1G072520.8
Wheat TraesCS4D02G271200 , TraesCS4B02G272000
Populus -


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cDNA sequences
Sobic.001G499300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G281400 expressed protein -
2 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
3 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
4 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
5 Sobic.001G459200 MYB family transcription factor, putative, expressed -
6 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
7 Sobic.001G393500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ca2+ sensors group(PubMedID : 30367619)@EF hand family protein, putative, expressed K02183: calmodulin
8 Sobic.002G312400 domain of unknown function domain containing protein, expressed -
9 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
10 Sobic.009G139400 expressed protein -
11 Sobic.003G136000 OsRhmbd3 - Putative Rhomboid homologue, expressed K09651: rhomboid domain-containing protein 1
12 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
13 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.001G308300 expressed protein -
15 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
16 Sobic.001G423800 DNA binding protein, putative, expressed -
17 Sobic.001G046100 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
18 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
19 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
20 Sobic.001G124600 - -


Gene co-expression network
sample Sobic001G499300 Sobic001G499300 Sobic001G281400 Sobic001G281400 Sobic001G499300--Sobic001G281400 Sobic009G008900 Sobic009G008900 Sobic001G499300--Sobic009G008900 Sobic001G177800 Sobic001G177800 Sobic001G499300--Sobic001G177800 Sobic004G187900 Sobic004G187900 Sobic001G499300--Sobic004G187900 Sobic001G459200 Sobic001G459200 Sobic001G499300--Sobic001G459200 Sobic006G173900 Sobic006G173900 Sobic001G499300--Sobic006G173900 Sobic001G393500 Sobic001G393500 Sobic001G499300--Sobic001G393500 Sobic002G312400 Sobic002G312400 Sobic001G499300--Sobic002G312400 Sobic001G477300 Sobic001G477300 Sobic001G499300--Sobic001G477300 Sobic001G281400--Sobic004G187900 Sobic002G267500 Sobic002G267500 Sobic001G281400--Sobic002G267500 Sobic010G149300 Sobic010G149300 Sobic001G281400--Sobic010G149300 Sobic002G190900 Sobic002G190900 Sobic001G281400--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic001G281400--Sobic002G046100 Sobic010G086200 Sobic010G086200 Sobic001G281400--Sobic010G086200 Sobic009G141800 Sobic009G141800 Sobic001G281400--Sobic009G141800 Sobic001G281400--Sobic009G008900 Sobic001G281400--Sobic001G499300 Sobic009G008900--Sobic006G173900 Sobic001G119400 Sobic001G119400 Sobic009G008900--Sobic001G119400 Sobic006G275200 Sobic006G275200 Sobic009G008900--Sobic006G275200 Sobic002G393000 Sobic002G393000 Sobic009G008900--Sobic002G393000 Sobic008G136400 Sobic008G136400 Sobic009G008900--Sobic008G136400 Sobic001G423800 Sobic001G423800 Sobic009G008900--Sobic001G423800 Sobic009G008900--Sobic001G177800 Sobic002G414600 Sobic002G414600 Sobic009G008900--Sobic002G414600 Sobic001G038900 Sobic001G038900 Sobic009G008900--Sobic001G038900 Sobic007G184600 Sobic007G184600 Sobic001G177800--Sobic007G184600 Sobic009G139400 Sobic009G139400 Sobic001G177800--Sobic009G139400 Sobic001G374700 Sobic001G374700 Sobic001G177800--Sobic001G374700 Sobic001G402050 Sobic001G402050 Sobic001G177800--Sobic001G402050 Sobic007G227300 Sobic007G227300 Sobic001G177800--Sobic007G227300 Sobic002G200600 Sobic002G200600 Sobic001G177800--Sobic002G200600 Sobic004G189400 Sobic004G189400 Sobic001G177800--Sobic004G189400 Sobic006G099900 Sobic006G099900 Sobic001G177800--Sobic006G099900 Sobic010G009300 Sobic010G009300 Sobic001G177800--Sobic010G009300 Sobic004G187900--Sobic001G281400 Sobic001G124600 Sobic001G124600 Sobic004G187900--Sobic001G124600 Sobic002G140400 Sobic002G140400 Sobic004G187900--Sobic002G140400 Sobic004G187900--Sobic009G141800 Sobic004G321300 Sobic004G321300 Sobic004G187900--Sobic004G321300 Sobic003G350300 Sobic003G350300 Sobic004G187900--Sobic003G350300 Sobic004G187900--Sobic009G008900 Sobic004G187900--Sobic001G477300 Sobic004G187900--Sobic008G136400 Sobic009G185800 Sobic009G185800 Sobic001G459200--Sobic009G185800 Sobic003G253000 Sobic003G253000 Sobic001G459200--Sobic003G253000 Sobic001G459200--Sobic001G499300 Sobic004G055200 Sobic004G055200 Sobic001G459200--Sobic004G055200 Sobic001G459200--Sobic002G267500 Sobic001G459200--Sobic002G046100 Sobic004G272800 Sobic004G272800 Sobic001G459200--Sobic004G272800 Sobic003G181500 Sobic003G181500 Sobic001G459200--Sobic003G181500 Sobic003G130800 Sobic003G130800 Sobic001G459200--Sobic003G130800 Sobic006G173900--Sobic009G008900 Sobic010G099900 Sobic010G099900 Sobic006G173900--Sobic010G099900 Sobic006G173900--Sobic002G393000 Sobic006G173900--Sobic006G275200 Sobic006G173900--Sobic008G136400 Sobic006G173900--Sobic002G414600 Sobic006G173900--Sobic001G119400 Sobic006G173900--Sobic001G423800 Sobic004G177700 Sobic004G177700 Sobic006G173900--Sobic004G177700 Sobic003G279300 Sobic003G279300 Sobic001G393500--Sobic003G279300 Sobic001G393500--Sobic001G499300 Sobic004G243100 Sobic004G243100 Sobic001G393500--Sobic004G243100 Sobic001G018300 Sobic001G018300 Sobic001G393500--Sobic001G018300 Sobic006G056400 Sobic006G056400 Sobic001G393500--Sobic006G056400 Sobic003G279500 Sobic003G279500 Sobic001G393500--Sobic003G279500 Sobic002G251000 Sobic002G251000 Sobic001G393500--Sobic002G251000 Sobic003G202200 Sobic003G202200 Sobic001G393500--Sobic003G202200 Sobic001G393500--Sobic004G187900 Sobic002G312400--Sobic001G281400 Sobic002G312400--Sobic001G499300 Sobic002G312400--Sobic004G187900 Sobic004G332900 Sobic004G332900 Sobic002G312400--Sobic004G332900 Sobic002G211900 Sobic002G211900 Sobic002G312400--Sobic002G211900 Sobic002G312400--Sobic006G173900 Sobic002G082600 Sobic002G082600 Sobic002G312400--Sobic002G082600 Sobic009G023200 Sobic009G023200 Sobic002G312400--Sobic009G023200 Sobic002G312400--Sobic004G177700 Sobic001G477300--Sobic001G124600 Sobic001G477300--Sobic004G187900 Sobic001G477300--Sobic002G046100 Sobic001G308300 Sobic001G308300 Sobic001G477300--Sobic001G308300 Sobic001G477300--Sobic010G086200 Sobic006G267200 Sobic006G267200 Sobic001G477300--Sobic006G267200 Sobic009G129000 Sobic009G129000 Sobic001G477300--Sobic009G129000 Sobic009G159400 Sobic009G159400 Sobic001G477300--Sobic009G159400 Sobic004G065500 Sobic004G065500 Sobic001G477300--Sobic004G065500
Octagon: transcription factors


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