Gene annotation
Transcriptome id Sobic.001G393500.2
Synonym calmodulin-like (CMLs) and calmodulin protein, Sb01g037280, ATCP1, CP1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Ca2+ sensors group (PubMedID : 30367619)
EF hand family protein, putative, expressed
UniProt A0A1Z5SA56
Pfam PF13499 PF00036
Panther DB PTHR10891 PTHR10891:SF629
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K02183; calmodulin
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT5G49480 : Ca2+-binding protein 1
RAP-DB (Rice) LOC_Os03g19720.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a052543
Brachypodium KQK21972
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G279300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoethanolamine/phosphocholine phosphatase, putative, expressed K06124: phosphoethanolamine/phosphocholine phosphatase
2 Sobic.001G499300 high-affinity nickel-transport family protein, putative, expressed -
3 Sobic.004G243100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.001G018300 cytochrome P450 71E1, putative, expressed -
5 Sobic.006G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
6 Sobic.003G279500 serine acetyltransferase 1(PubMedID : 26465154)@serine acetyltransferase protein, putative, expressed K00640: serine O-acetyltransferase
7 Sobic.002G251000 expressed protein -
8 Sobic.003G202200 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
9 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
10 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.001G308300 expressed protein -
12 Sobic.010G180600 OsIAA23 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
13 Sobic.001G481100 DUF581 domain containing protein, expressed -
14 Sobic.004G330700 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
15 Sobic.001G231400 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
16 Sobic.009G122400 expressed protein -
17 Sobic.002G192000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AN1-like zinc finger domain containing protein, expressed -
18 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
20 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -


Gene co-expression network
sample Sobic001G393500 Sobic001G393500 Sobic003G279300 Sobic003G279300 Sobic001G393500--Sobic003G279300 Sobic001G499300 Sobic001G499300 Sobic001G393500--Sobic001G499300 Sobic004G243100 Sobic004G243100 Sobic001G393500--Sobic004G243100 Sobic001G018300 Sobic001G018300 Sobic001G393500--Sobic001G018300 Sobic006G056400 Sobic006G056400 Sobic001G393500--Sobic006G056400 Sobic003G279500 Sobic003G279500 Sobic001G393500--Sobic003G279500 Sobic002G251000 Sobic002G251000 Sobic001G393500--Sobic002G251000 Sobic003G202200 Sobic003G202200 Sobic001G393500--Sobic003G202200 Sobic004G187900 Sobic004G187900 Sobic001G393500--Sobic004G187900 Sobic003G279300--Sobic001G393500 Sobic003G279300--Sobic003G279500 Sobic009G184100 Sobic009G184100 Sobic003G279300--Sobic009G184100 Sobic008G066401 Sobic008G066401 Sobic003G279300--Sobic008G066401 Sobic003G268600 Sobic003G268600 Sobic003G279300--Sobic003G268600 Sobic009G145700 Sobic009G145700 Sobic003G279300--Sobic009G145700 Sobic009G145600 Sobic009G145600 Sobic003G279300--Sobic009G145600 Sobic001G318700 Sobic001G318700 Sobic003G279300--Sobic001G318700 Sobic006G235000 Sobic006G235000 Sobic003G279300--Sobic006G235000 Sobic001G281400 Sobic001G281400 Sobic001G499300--Sobic001G281400 Sobic009G008900 Sobic009G008900 Sobic001G499300--Sobic009G008900 Sobic001G177800 Sobic001G177800 Sobic001G499300--Sobic001G177800 Sobic001G499300--Sobic004G187900 Sobic001G459200 Sobic001G459200 Sobic001G499300--Sobic001G459200 Sobic006G173900 Sobic006G173900 Sobic001G499300--Sobic006G173900 Sobic001G499300--Sobic001G393500 Sobic002G312400 Sobic002G312400 Sobic001G499300--Sobic002G312400 Sobic001G477300 Sobic001G477300 Sobic001G499300--Sobic001G477300 Sobic004G243100--Sobic001G018300 Sobic001G231400 Sobic001G231400 Sobic004G243100--Sobic001G231400 Sobic009G224100 Sobic009G224100 Sobic004G243100--Sobic009G224100 Sobic001G423800 Sobic001G423800 Sobic004G243100--Sobic001G423800 Sobic002G139400 Sobic002G139400 Sobic004G243100--Sobic002G139400 Sobic002G192000 Sobic002G192000 Sobic004G243100--Sobic002G192000 Sobic004G243100--Sobic002G251000 Sobic003G282901 Sobic003G282901 Sobic004G243100--Sobic003G282901 Sobic002G263400 Sobic002G263400 Sobic004G243100--Sobic002G263400 Sobic001G018300--Sobic004G243100 Sobic001G018300--Sobic001G231400 Sobic001G018300--Sobic002G192000 Sobic001G018300--Sobic001G318700 Sobic001G018300--Sobic001G423800 Sobic001G018300--Sobic002G263400 Sobic004G229800 Sobic004G229800 Sobic001G018300--Sobic004G229800 Sobic001G367600 Sobic001G367600 Sobic001G018300--Sobic001G367600 Sobic007G155100 Sobic007G155100 Sobic001G018300--Sobic007G155100 Sobic002G333400 Sobic002G333400 Sobic006G056400--Sobic002G333400 Sobic006G158600 Sobic006G158600 Sobic006G056400--Sobic006G158600 Sobic008G136400 Sobic008G136400 Sobic006G056400--Sobic008G136400 Sobic003G369100 Sobic003G369100 Sobic006G056400--Sobic003G369100 Sobic005G186100 Sobic005G186100 Sobic006G056400--Sobic005G186100 Sobic002G140400 Sobic002G140400 Sobic006G056400--Sobic002G140400 Sobic007G074000 Sobic007G074000 Sobic006G056400--Sobic007G074000 Sobic006G056400--Sobic001G318700 Sobic001G308300 Sobic001G308300 Sobic006G056400--Sobic001G308300 Sobic003G279500--Sobic007G074000 Sobic003G228900 Sobic003G228900 Sobic003G279500--Sobic003G228900 Sobic001G138600 Sobic001G138600 Sobic003G279500--Sobic001G138600 Sobic007G169700 Sobic007G169700 Sobic003G279500--Sobic007G169700 Sobic009G184000 Sobic009G184000 Sobic003G279500--Sobic009G184000 Sobic004G237800 Sobic004G237800 Sobic003G279500--Sobic004G237800 Sobic001G112200 Sobic001G112200 Sobic003G279500--Sobic001G112200 Sobic004G141200 Sobic004G141200 Sobic003G279500--Sobic004G141200 Sobic003G279500--Sobic003G369100 Sobic002G251000--Sobic004G243100 Sobic002G251000--Sobic001G318700 Sobic002G251000--Sobic001G423800 Sobic002G251000--Sobic001G231400 Sobic002G251000--Sobic001G018300 Sobic001G192200 Sobic001G192200 Sobic002G251000--Sobic001G192200 Sobic002G251000--Sobic003G282901 Sobic002G251000--Sobic002G140400 Sobic004G189400 Sobic004G189400 Sobic002G251000--Sobic004G189400 Sobic001G481100 Sobic001G481100 Sobic003G202200--Sobic001G481100 Sobic009G247900 Sobic009G247900 Sobic003G202200--Sobic009G247900 Sobic001G383700 Sobic001G383700 Sobic003G202200--Sobic001G383700 Sobic001G449700 Sobic001G449700 Sobic003G202200--Sobic001G449700 Sobic003G021500 Sobic003G021500 Sobic003G202200--Sobic003G021500 Sobic003G202200--Sobic003G228900 Sobic004G191400 Sobic004G191400 Sobic003G202200--Sobic004G191400 Sobic003G364600 Sobic003G364600 Sobic003G202200--Sobic003G364600 Sobic009G036000 Sobic009G036000 Sobic003G202200--Sobic009G036000 Sobic004G187900--Sobic001G281400 Sobic001G124600 Sobic001G124600 Sobic004G187900--Sobic001G124600 Sobic004G187900--Sobic002G140400 Sobic009G141800 Sobic009G141800 Sobic004G187900--Sobic009G141800 Sobic004G321300 Sobic004G321300 Sobic004G187900--Sobic004G321300 Sobic003G350300 Sobic003G350300 Sobic004G187900--Sobic003G350300 Sobic004G187900--Sobic009G008900 Sobic004G187900--Sobic001G477300 Sobic004G187900--Sobic008G136400
Octagon: transcription factors


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