Gene annotation
Transcriptome id Sobic.004G330700.1
Synonym Sb04g035960
Functional annotation CAF1 family ribonuclease containing protein, putative, expressed
UniProt C5XUG9
Pfam PF04857
Panther DB PTHR10797
NCBI CDD KOG0304; mRNA deadenylase subunit
KEGG Orthology K12581; CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT2G32070 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os02g55300.1 : CAF1 family ribonuclease containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a032930 , Zm00025a022474
Brachypodium PNT69343 , KQK01150
Barley HORVU7Hr1G067520.1 , HORVU7Hr1G067520.3 , HORVU7Hr1G067520.2 , HORVU6Hr1G085410.4 , HORVU6Hr1G085410.5 , HORVU6Hr1G085410.6 , HORVU6Hr1G085410.7 , HORVU6Hr1G085410.1 , HORVU6Hr1G085410.2 , HORVU6Hr1G085410.3 , HORVU6Hr1G085410.8 , HORVU6Hr1G085410.9
Wheat -
Populus -


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cDNA sequences
Sobic.004G330700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
2 Sobic.001G459200 MYB family transcription factor, putative, expressed -
3 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
4 Sobic.001G393500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ca2+ sensors group(PubMedID : 30367619)@EF hand family protein, putative, expressed K02183: calmodulin
5 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
6 Sobic.001G499300 high-affinity nickel-transport family protein, putative, expressed -
7 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
8 Sobic.010G135000 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
9 Sobic.003G136000 OsRhmbd3 - Putative Rhomboid homologue, expressed K09651: rhomboid domain-containing protein 1
10 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
11 Sobic.006G010600 peptidyl-prolyl cis-trans isomerase, putative, expressed K09578: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
12 Sobic.004G219300 GLTP domain containing protein, putative, expressed -
13 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
14 Sobic.009G203100 expressed protein -
15 Sobic.010G104100 NF-X1-type zinc finger protein, putative, expressed K12236: transcriptional repressor NF-X1
16 Sobic.001G288800 nonsense-mediated mRNA decay protein 3, putative, expressed K07562: nonsense-mediated mRNA decay protein 3
17 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
18 Sobic.006G180200 transmembrane amino acid transporter protein, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
19 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
20 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -


Gene co-expression network
sample Sobic004G330700 Sobic004G330700 Sobic004G055200 Sobic004G055200 Sobic004G330700--Sobic004G055200 Sobic001G459200 Sobic001G459200 Sobic004G330700--Sobic001G459200 Sobic009G185800 Sobic009G185800 Sobic004G330700--Sobic009G185800 Sobic001G393500 Sobic001G393500 Sobic004G330700--Sobic001G393500 Sobic003G130800 Sobic003G130800 Sobic004G330700--Sobic003G130800 Sobic001G499300 Sobic001G499300 Sobic004G330700--Sobic001G499300 Sobic003G181500 Sobic003G181500 Sobic004G330700--Sobic003G181500 Sobic010G135000 Sobic010G135000 Sobic004G330700--Sobic010G135000 Sobic003G136000 Sobic003G136000 Sobic004G330700--Sobic003G136000 Sobic008G033600 Sobic008G033600 Sobic004G055200--Sobic008G033600 Sobic004G055200--Sobic001G459200 Sobic004G055200--Sobic003G130800 Sobic004G055200--Sobic004G330700 Sobic001G281400 Sobic001G281400 Sobic004G055200--Sobic001G281400 Sobic004G187900 Sobic004G187900 Sobic004G055200--Sobic004G187900 Sobic004G055200--Sobic001G499300 Sobic001G477300 Sobic001G477300 Sobic004G055200--Sobic001G477300 Sobic007G051000 Sobic007G051000 Sobic004G055200--Sobic007G051000 Sobic001G459200--Sobic009G185800 Sobic003G253000 Sobic003G253000 Sobic001G459200--Sobic003G253000 Sobic001G459200--Sobic001G499300 Sobic001G459200--Sobic004G055200 Sobic002G267500 Sobic002G267500 Sobic001G459200--Sobic002G267500 Sobic002G046100 Sobic002G046100 Sobic001G459200--Sobic002G046100 Sobic004G272800 Sobic004G272800 Sobic001G459200--Sobic004G272800 Sobic001G459200--Sobic003G181500 Sobic001G459200--Sobic003G130800 Sobic009G185800--Sobic001G459200 Sobic004G049900 Sobic004G049900 Sobic009G185800--Sobic004G049900 Sobic009G185800--Sobic003G253000 Sobic009G185800--Sobic003G130800 Sobic006G108400 Sobic006G108400 Sobic009G185800--Sobic006G108400 Sobic003G350300 Sobic003G350300 Sobic009G185800--Sobic003G350300 Sobic009G185800--Sobic004G330700 Sobic009G185800--Sobic004G272800 Sobic009G185800--Sobic003G181500 Sobic003G279300 Sobic003G279300 Sobic001G393500--Sobic003G279300 Sobic001G393500--Sobic001G499300 Sobic004G243100 Sobic004G243100 Sobic001G393500--Sobic004G243100 Sobic001G018300 Sobic001G018300 Sobic001G393500--Sobic001G018300 Sobic006G056400 Sobic006G056400 Sobic001G393500--Sobic006G056400 Sobic003G279500 Sobic003G279500 Sobic001G393500--Sobic003G279500 Sobic002G251000 Sobic002G251000 Sobic001G393500--Sobic002G251000 Sobic003G202200 Sobic003G202200 Sobic001G393500--Sobic003G202200 Sobic001G393500--Sobic004G187900 Sobic003G130800--Sobic009G185800 Sobic003G130800--Sobic003G253000 Sobic003G130800--Sobic001G459200 Sobic006G180200 Sobic006G180200 Sobic003G130800--Sobic006G180200 Sobic002G345300 Sobic002G345300 Sobic003G130800--Sobic002G345300 Sobic003G130800--Sobic004G049900 Sobic003G130800--Sobic004G055200 Sobic003G130800--Sobic010G135000 Sobic003G130800--Sobic003G181500 Sobic001G499300--Sobic001G281400 Sobic009G008900 Sobic009G008900 Sobic001G499300--Sobic009G008900 Sobic001G177800 Sobic001G177800 Sobic001G499300--Sobic001G177800 Sobic001G499300--Sobic004G187900 Sobic001G499300--Sobic001G459200 Sobic006G173900 Sobic006G173900 Sobic001G499300--Sobic006G173900 Sobic001G499300--Sobic001G393500 Sobic002G312400 Sobic002G312400 Sobic001G499300--Sobic002G312400 Sobic001G499300--Sobic001G477300 Sobic003G181500--Sobic004G187900 Sobic003G181500--Sobic003G350300 Sobic010G149300 Sobic010G149300 Sobic003G181500--Sobic010G149300 Sobic003G249800 Sobic003G249800 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic003G181500--Sobic001G281400 Sobic009G023200 Sobic009G023200 Sobic003G181500--Sobic009G023200 Sobic002G211900 Sobic002G211900 Sobic003G181500--Sobic002G211900 Sobic003G181500--Sobic002G046100 Sobic010G135000--Sobic003G130800 Sobic010G135000--Sobic006G180200 Sobic010G135000--Sobic002G345300 Sobic010G135000--Sobic003G181500 Sobic010G135000--Sobic001G459200 Sobic010G135000--Sobic009G023200 Sobic010G135000--Sobic003G350300 Sobic010G135000--Sobic004G330700 Sobic010G135000--Sobic009G185800 Sobic003G136000--Sobic001G499300 Sobic010G223600 Sobic010G223600 Sobic003G136000--Sobic010G223600 Sobic001G032800 Sobic001G032800 Sobic003G136000--Sobic001G032800 Sobic003G136000--Sobic004G055200 Sobic003G136000--Sobic010G149300 Sobic003G136000--Sobic003G130800 Sobic003G136000--Sobic003G181500 Sobic003G136000--Sobic001G477300 Sobic001G124600 Sobic001G124600 Sobic003G136000--Sobic001G124600
Octagon: transcription factors


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