Gene annotation
Transcriptome id Sobic.009G185800.1
Synonym Sb09g024530
Functional annotation translation initiation factor SUI1, putative, expressed
UniProt C5Z0D7
Pfam PF01253
Panther DB PTHR10388 PTHR10388:SF14
NCBI CDD KOG1770; Translation initiation factor 1 (eIF-1/SUI1)
KEGG Orthology K03113; EIF1, translation initiation factor 1
Gene Ontology GO:0006413; translational initiation GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT1G54290 : Translation initiation factor SUI1 family protein
RAP-DB (Rice) LOC_Os05g41900.2 : translation initiation factor SUI1, putative, expressed
MaizeGDB (Corn) Zm00025a044115 , Zm00025a027223
Brachypodium KQK05570 , KQK10150 , KQK10151
Barley HORVU3Hr1G077960.1 , HORVU3Hr1G077960.2 , HORVU3Hr1G077960.3 , HORVU3Hr1G077960.4
Wheat TraesCS1A02G316900 , TraesCS3A02G327200 , TraesCS3D02G320600 , TraesCS3B02G356600 , TraesCS1B02G329300 , TraesCS1D02G316900
Populus PNT28494 , PNT28493


JBrowse

Open New Page


cDNA sequences
Sobic.009G185800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G459200 MYB family transcription factor, putative, expressed -
2 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
3 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
4 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
5 Sobic.006G108400 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
6 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
7 Sobic.004G330700 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
8 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
9 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
10 Sobic.001G281400 expressed protein -
11 Sobic.010G121300 nitrate-induced NOI protein, putative, expressed -
12 Sobic.001G499300 high-affinity nickel-transport family protein, putative, expressed -
13 Sobic.009G203100 expressed protein -
14 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
15 Sobic.006G180200 transmembrane amino acid transporter protein, putative, expressed K14209: SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
16 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.001G048832 - -
18 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
19 Sobic.010G135000 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
20 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D


Gene co-expression network
sample Sobic009G185800 Sobic009G185800 Sobic001G459200 Sobic001G459200 Sobic009G185800--Sobic001G459200 Sobic004G049900 Sobic004G049900 Sobic009G185800--Sobic004G049900 Sobic003G253000 Sobic003G253000 Sobic009G185800--Sobic003G253000 Sobic003G130800 Sobic003G130800 Sobic009G185800--Sobic003G130800 Sobic006G108400 Sobic006G108400 Sobic009G185800--Sobic006G108400 Sobic003G350300 Sobic003G350300 Sobic009G185800--Sobic003G350300 Sobic004G330700 Sobic004G330700 Sobic009G185800--Sobic004G330700 Sobic004G272800 Sobic004G272800 Sobic009G185800--Sobic004G272800 Sobic003G181500 Sobic003G181500 Sobic009G185800--Sobic003G181500 Sobic001G459200--Sobic009G185800 Sobic001G459200--Sobic003G253000 Sobic001G499300 Sobic001G499300 Sobic001G459200--Sobic001G499300 Sobic004G055200 Sobic004G055200 Sobic001G459200--Sobic004G055200 Sobic002G267500 Sobic002G267500 Sobic001G459200--Sobic002G267500 Sobic002G046100 Sobic002G046100 Sobic001G459200--Sobic002G046100 Sobic001G459200--Sobic004G272800 Sobic001G459200--Sobic003G181500 Sobic001G459200--Sobic003G130800 Sobic004G049900--Sobic003G253000 Sobic004G049900--Sobic009G185800 Sobic004G049900--Sobic006G108400 Sobic004G049900--Sobic003G130800 Sobic004G049900--Sobic001G459200 Sobic004G050000 Sobic004G050000 Sobic004G049900--Sobic004G050000 Sobic001G415500 Sobic001G415500 Sobic004G049900--Sobic001G415500 Sobic004G049900--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G049900--Sobic001G281400 Sobic006G141500 Sobic006G141500 Sobic003G253000--Sobic006G141500 Sobic003G253000--Sobic004G049900 Sobic003G253000--Sobic002G267500 Sobic003G253000--Sobic004G272800 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic003G253000--Sobic002G046100 Sobic003G253000--Sobic009G185800 Sobic003G253000--Sobic006G108400 Sobic003G130800--Sobic009G185800 Sobic003G130800--Sobic003G253000 Sobic003G130800--Sobic001G459200 Sobic006G180200 Sobic006G180200 Sobic003G130800--Sobic006G180200 Sobic003G130800--Sobic002G345300 Sobic003G130800--Sobic004G049900 Sobic003G130800--Sobic004G055200 Sobic010G135000 Sobic010G135000 Sobic003G130800--Sobic010G135000 Sobic003G130800--Sobic003G181500 Sobic006G108400--Sobic004G049900 Sobic006G108400--Sobic003G253000 Sobic008G161800 Sobic008G161800 Sobic006G108400--Sobic008G161800 Sobic006G108400--Sobic009G185800 Sobic006G108400--Sobic001G415500 Sobic006G108400--Sobic004G272800 Sobic006G108400--Sobic001G459200 Sobic006G108400--Sobic004G050000 Sobic006G108400--Sobic002G267500 Sobic004G187900 Sobic004G187900 Sobic003G350300--Sobic004G187900 Sobic003G350300--Sobic002G345300 Sobic003G350300--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic003G350300--Sobic003G285800 Sobic003G350300--Sobic001G281400 Sobic004G321300 Sobic004G321300 Sobic003G350300--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic003G350300--Sobic010G274900 Sobic010G086200 Sobic010G086200 Sobic003G350300--Sobic010G086200 Sobic003G350300--Sobic003G181500 Sobic004G330700--Sobic004G055200 Sobic004G330700--Sobic001G459200 Sobic004G330700--Sobic009G185800 Sobic001G393500 Sobic001G393500 Sobic004G330700--Sobic001G393500 Sobic004G330700--Sobic003G130800 Sobic004G330700--Sobic001G499300 Sobic004G330700--Sobic003G181500 Sobic004G330700--Sobic010G135000 Sobic003G136000 Sobic003G136000 Sobic004G330700--Sobic003G136000 Sobic004G272800--Sobic002G267500 Sobic004G272800--Sobic001G281400 Sobic004G272800--Sobic003G253000 Sobic001G048832 Sobic001G048832 Sobic004G272800--Sobic001G048832 Sobic002G190900 Sobic002G190900 Sobic004G272800--Sobic002G190900 Sobic004G272800--Sobic002G345300 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic003G181500--Sobic004G187900 Sobic003G181500--Sobic003G350300 Sobic010G149300 Sobic010G149300 Sobic003G181500--Sobic010G149300 Sobic003G249800 Sobic003G249800 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic003G181500--Sobic001G281400 Sobic009G023200 Sobic009G023200 Sobic003G181500--Sobic009G023200 Sobic002G211900 Sobic002G211900 Sobic003G181500--Sobic002G211900 Sobic003G181500--Sobic002G046100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.