Gene annotation
Transcriptome id Sobic.003G350300.1
Synonym Sb03g039320, ATUBC7, UBC7
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5XPM8
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF109
NCBI CDD KOG0425; Ubiquitin-protein ligase
KEGG Orthology K10575; UBE2G1, ubiquitin-conjugating enzyme E2 G1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G59300 : ubiquitin carrier protein 7
RAP-DB (Rice) LOC_Os01g62244.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a026932 , Zm00025a039688 , Zm00025a037703 , Zm00025a043903
Brachypodium KQK10505
Barley HORVU3Hr1G086540.2 , HORVU3Hr1G086540.3 , HORVU3Hr1G086540.1 , HORVU3Hr1G086540.4 , HORVU3Hr1G086540.5
Wheat TraesCS3D02G351600 , TraesCS3B02G390400 , TraesCS3A02G357700
Populus -


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cDNA sequences
Sobic.003G350300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
2 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
3 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
4 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
5 Sobic.001G281400 expressed protein -
6 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.010G274900 serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed -
8 Sobic.010G086200 GRAM domain containing protein, expressed -
9 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
10 Sobic.001G124600 - -
11 Sobic.010G178200 hemoglobin-like protein HbO, putative, expressed -
12 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
13 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
14 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
15 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
16 Sobic.006G141500 expressed protein -
17 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
18 Sobic.001G019900 zinc finger, C3HC4 type domain containing protein, expressed K15707: RING finger protein 170
19 Sobic.004G177700 AIG1, putative, expressed -
20 Sobic.003G393700 zinc finger, RING-type, putative, expressed -


Gene co-expression network
sample Sobic003G350300 Sobic003G350300 Sobic004G187900 Sobic004G187900 Sobic003G350300--Sobic004G187900 Sobic002G345300 Sobic002G345300 Sobic003G350300--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G350300--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic003G350300--Sobic003G285800 Sobic001G281400 Sobic001G281400 Sobic003G350300--Sobic001G281400 Sobic004G321300 Sobic004G321300 Sobic003G350300--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic003G350300--Sobic010G274900 Sobic010G086200 Sobic010G086200 Sobic003G350300--Sobic010G086200 Sobic003G181500 Sobic003G181500 Sobic003G350300--Sobic003G181500 Sobic004G187900--Sobic001G281400 Sobic001G124600 Sobic001G124600 Sobic004G187900--Sobic001G124600 Sobic002G140400 Sobic002G140400 Sobic004G187900--Sobic002G140400 Sobic009G141800 Sobic009G141800 Sobic004G187900--Sobic009G141800 Sobic004G187900--Sobic004G321300 Sobic004G187900--Sobic003G350300 Sobic009G008900 Sobic009G008900 Sobic004G187900--Sobic009G008900 Sobic001G477300 Sobic001G477300 Sobic004G187900--Sobic001G477300 Sobic008G136400 Sobic008G136400 Sobic004G187900--Sobic008G136400 Sobic002G345300--Sobic002G046100 Sobic002G345300--Sobic003G350300 Sobic002G345300--Sobic001G281400 Sobic010G178200 Sobic010G178200 Sobic002G345300--Sobic010G178200 Sobic002G267500 Sobic002G267500 Sobic002G345300--Sobic002G267500 Sobic003G253000 Sobic003G253000 Sobic002G345300--Sobic003G253000 Sobic002G345300--Sobic003G285800 Sobic004G272800 Sobic004G272800 Sobic002G345300--Sobic004G272800 Sobic010G149300 Sobic010G149300 Sobic002G345300--Sobic010G149300 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic002G046100--Sobic001G477300 Sobic002G046100--Sobic002G267500 Sobic002G190900 Sobic002G190900 Sobic002G046100--Sobic002G190900 Sobic003G285800--Sobic002G046100 Sobic003G285800--Sobic002G187500 Sobic003G285800--Sobic010G178200 Sobic003G285800--Sobic003G350300 Sobic003G285800--Sobic002G345300 Sobic003G285800--Sobic001G477300 Sobic003G285800--Sobic001G281400 Sobic003G285800--Sobic010G086200 Sobic009G129000 Sobic009G129000 Sobic003G285800--Sobic009G129000 Sobic001G281400--Sobic004G187900 Sobic001G281400--Sobic002G267500 Sobic001G281400--Sobic010G149300 Sobic001G281400--Sobic002G190900 Sobic001G281400--Sobic002G046100 Sobic001G281400--Sobic010G086200 Sobic001G281400--Sobic009G141800 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300 Sobic004G237800 Sobic004G237800 Sobic004G321300--Sobic004G237800 Sobic009G159400 Sobic009G159400 Sobic004G321300--Sobic009G159400 Sobic004G321300--Sobic008G136400 Sobic008G139600 Sobic008G139600 Sobic004G321300--Sobic008G139600 Sobic001G038900 Sobic001G038900 Sobic004G321300--Sobic001G038900 Sobic002G055700 Sobic002G055700 Sobic004G321300--Sobic002G055700 Sobic001G140900 Sobic001G140900 Sobic004G321300--Sobic001G140900 Sobic005G091500 Sobic005G091500 Sobic004G321300--Sobic005G091500 Sobic003G345100 Sobic003G345100 Sobic004G321300--Sobic003G345100 Sobic001G477600 Sobic001G477600 Sobic010G274900--Sobic001G477600 Sobic003G367200 Sobic003G367200 Sobic010G274900--Sobic003G367200 Sobic010G274900--Sobic003G350300 Sobic010G274900--Sobic008G136400 Sobic010G166500 Sobic010G166500 Sobic010G274900--Sobic010G166500 Sobic006G275200 Sobic006G275200 Sobic010G274900--Sobic006G275200 Sobic010G274900--Sobic009G008900 Sobic007G015600 Sobic007G015600 Sobic010G274900--Sobic007G015600 Sobic003G357300 Sobic003G357300 Sobic010G274900--Sobic003G357300 Sobic006G267200 Sobic006G267200 Sobic010G086200--Sobic006G267200 Sobic004G065500 Sobic004G065500 Sobic010G086200--Sobic004G065500 Sobic010G086200--Sobic004G321300 Sobic010G086200--Sobic009G141800 Sobic010G086200--Sobic009G129000 Sobic009G143400 Sobic009G143400 Sobic010G086200--Sobic009G143400 Sobic001G459800 Sobic001G459800 Sobic010G086200--Sobic001G459800 Sobic009G033700 Sobic009G033700 Sobic010G086200--Sobic009G033700 Sobic003G393900 Sobic003G393900 Sobic010G086200--Sobic003G393900 Sobic003G181500--Sobic004G187900 Sobic003G181500--Sobic003G350300 Sobic003G181500--Sobic010G149300 Sobic003G249800 Sobic003G249800 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic003G181500--Sobic001G281400 Sobic009G023200 Sobic009G023200 Sobic003G181500--Sobic009G023200 Sobic002G211900 Sobic002G211900 Sobic003G181500--Sobic002G211900 Sobic003G181500--Sobic002G046100
Octagon: transcription factors


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