Gene annotation
Transcriptome id Sobic.004G187900.1
Synonym GCH, RFD1, ATRIBA1, Sb04g023640, ATGCH
Functional annotation riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed
UniProt C5XVM3
Pfam PF00925 PF00926
Panther DB PTHR21327 PTHR21327:SF11
NCBI CDD KOG1284; Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase
KEGG Orthology K14652; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
Gene Ontology GO:0009231; riboflavin biosynthetic process GO:0003935GTP cyclohydrolase II activity GO:00086863,4-dihydroxy-2-butanone-4-phosphate synthase activity


Orthologs (automatic annotation)
TAIR AT5G64300 : GTP cyclohydrolase II
RAP-DB (Rice) LOC_Os02g36340.1 : riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a020775 , Zm00025a031698
Brachypodium KQJ99989 , PNT68875 , PNT68877 , PNT68876 , PNT68878
Barley HORVU6Hr1G051560.1 , HORVU6Hr1G051560.2 , HORVU6Hr1G051560.5 , HORVU6Hr1G051560.4 , HORVU6Hr1G051560.7 , HORVU6Hr1G051560.6 , HORVU6Hr1G051560.8
Wheat TraesCS6D02G189100 , TraesCS6B02G230600 , TraesCS6A02G207300 , TraesCS6A02G207300
Populus PNT35347 , PNT35346


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cDNA sequences
Sobic.004G187900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G281400 expressed protein -
2 Sobic.001G124600 - -
3 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
4 Sobic.009G141800 cytochrome c, putative, expressed K08738: cytochrome c
5 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
6 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
7 Sobic.009G008900 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
8 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
9 Sobic.008G136400 expressed protein -
10 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
11 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
12 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
13 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
14 Sobic.004G189400 expressed protein -
15 Sobic.010G086200 GRAM domain containing protein, expressed -
16 Sobic.001G015100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
17 Sobic.003G334600 NAC domain transcription factor, putative, expressed -
18 Sobic.006G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
19 Sobic.001G107400 helix-loop-helix DNA-binding domain containing protein, expressed -
20 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML


Gene co-expression network
sample Sobic004G187900 Sobic004G187900 Sobic001G281400 Sobic001G281400 Sobic004G187900--Sobic001G281400 Sobic001G124600 Sobic001G124600 Sobic004G187900--Sobic001G124600 Sobic002G140400 Sobic002G140400 Sobic004G187900--Sobic002G140400 Sobic009G141800 Sobic009G141800 Sobic004G187900--Sobic009G141800 Sobic004G321300 Sobic004G321300 Sobic004G187900--Sobic004G321300 Sobic003G350300 Sobic003G350300 Sobic004G187900--Sobic003G350300 Sobic009G008900 Sobic009G008900 Sobic004G187900--Sobic009G008900 Sobic001G477300 Sobic001G477300 Sobic004G187900--Sobic001G477300 Sobic008G136400 Sobic008G136400 Sobic004G187900--Sobic008G136400 Sobic001G281400--Sobic004G187900 Sobic002G267500 Sobic002G267500 Sobic001G281400--Sobic002G267500 Sobic010G149300 Sobic010G149300 Sobic001G281400--Sobic010G149300 Sobic002G190900 Sobic002G190900 Sobic001G281400--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic001G281400--Sobic002G046100 Sobic010G086200 Sobic010G086200 Sobic001G281400--Sobic010G086200 Sobic001G281400--Sobic009G141800 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300 Sobic001G124600--Sobic004G187900 Sobic001G124600--Sobic001G477300 Sobic002G393000 Sobic002G393000 Sobic001G124600--Sobic002G393000 Sobic001G038900 Sobic001G038900 Sobic001G124600--Sobic001G038900 Sobic001G124600--Sobic009G008900 Sobic001G124600--Sobic002G140400 Sobic001G124600--Sobic009G141800 Sobic001G119400 Sobic001G119400 Sobic001G124600--Sobic001G119400 Sobic001G124600--Sobic010G086200 Sobic002G140400--Sobic001G038900 Sobic002G263400 Sobic002G263400 Sobic002G140400--Sobic002G263400 Sobic004G189400 Sobic004G189400 Sobic002G140400--Sobic004G189400 Sobic001G423800 Sobic001G423800 Sobic002G140400--Sobic001G423800 Sobic002G140400--Sobic008G136400 Sobic007G074000 Sobic007G074000 Sobic002G140400--Sobic007G074000 Sobic004G237800 Sobic004G237800 Sobic002G140400--Sobic004G237800 Sobic008G050600 Sobic008G050600 Sobic002G140400--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic002G140400--Sobic003G286600 Sobic006G267200 Sobic006G267200 Sobic009G141800--Sobic006G267200 Sobic009G141800--Sobic010G086200 Sobic003G393900 Sobic003G393900 Sobic009G141800--Sobic003G393900 Sobic004G065500 Sobic004G065500 Sobic009G141800--Sobic004G065500 Sobic009G141800--Sobic004G187900 Sobic009G141800--Sobic001G281400 Sobic009G141800--Sobic009G008900 Sobic003G387000 Sobic003G387000 Sobic009G141800--Sobic003G387000 Sobic001G459800 Sobic001G459800 Sobic009G141800--Sobic001G459800 Sobic004G321300--Sobic004G237800 Sobic009G159400 Sobic009G159400 Sobic004G321300--Sobic009G159400 Sobic004G321300--Sobic008G136400 Sobic008G139600 Sobic008G139600 Sobic004G321300--Sobic008G139600 Sobic004G321300--Sobic001G038900 Sobic002G055700 Sobic002G055700 Sobic004G321300--Sobic002G055700 Sobic001G140900 Sobic001G140900 Sobic004G321300--Sobic001G140900 Sobic005G091500 Sobic005G091500 Sobic004G321300--Sobic005G091500 Sobic003G345100 Sobic003G345100 Sobic004G321300--Sobic003G345100 Sobic003G350300--Sobic004G187900 Sobic002G345300 Sobic002G345300 Sobic003G350300--Sobic002G345300 Sobic003G350300--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic003G350300--Sobic003G285800 Sobic003G350300--Sobic001G281400 Sobic003G350300--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic003G350300--Sobic010G274900 Sobic003G350300--Sobic010G086200 Sobic003G181500 Sobic003G181500 Sobic003G350300--Sobic003G181500 Sobic006G173900 Sobic006G173900 Sobic009G008900--Sobic006G173900 Sobic009G008900--Sobic001G119400 Sobic006G275200 Sobic006G275200 Sobic009G008900--Sobic006G275200 Sobic009G008900--Sobic002G393000 Sobic009G008900--Sobic008G136400 Sobic009G008900--Sobic001G423800 Sobic001G177800 Sobic001G177800 Sobic009G008900--Sobic001G177800 Sobic002G414600 Sobic002G414600 Sobic009G008900--Sobic002G414600 Sobic009G008900--Sobic001G038900 Sobic001G477300--Sobic001G124600 Sobic001G477300--Sobic004G187900 Sobic001G477300--Sobic002G046100 Sobic001G308300 Sobic001G308300 Sobic001G477300--Sobic001G308300 Sobic001G477300--Sobic010G086200 Sobic001G477300--Sobic006G267200 Sobic009G129000 Sobic009G129000 Sobic001G477300--Sobic009G129000 Sobic001G477300--Sobic009G159400 Sobic001G477300--Sobic004G065500 Sobic008G136400--Sobic001G038900 Sobic008G136400--Sobic008G050600 Sobic008G136400--Sobic002G140400 Sobic008G136400--Sobic006G275200 Sobic008G136400--Sobic001G140900 Sobic006G158600 Sobic006G158600 Sobic008G136400--Sobic006G158600 Sobic008G136400--Sobic004G189400 Sobic008G136400--Sobic001G423800 Sobic008G136400--Sobic009G008900
Octagon: transcription factors


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