Gene annotation
Transcriptome id Sobic.001G107400.2,Sobic.001G107400.1,Sobic.001G107400.3
Synonym Sb01g009590
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6QIC7 , A0A1B6QIE7
Pfam PF00010
Panther DB PTHR23042 PTHR23042:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37850 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g51580.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007959 , Zm00025a016900
Brachypodium KQK13445 , KQK13444 , KQK13446
Barley HORVU4Hr1G009440.1 , HORVU4Hr1G009440.3 , HORVU4Hr1G009440.2 , HORVU4Hr1G009440.5 , HORVU4Hr1G009440.4
Wheat TraesCS4D02G056900 , TraesCS4D02G056900 , TraesCS4B02G056600 , TraesCS4B02G056600 , TraesCS4A02G257900 , TraesCS4A02G257900
Populus -


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cDNA sequences
Sobic.001G107400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
2 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
3 Sobic.003G037800 transferase family protein, putative, expressed -
4 Sobic.009G141800 cytochrome c, putative, expressed K08738: cytochrome c
5 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
6 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
7 Sobic.001G281400 expressed protein -
8 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
9 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
10 Sobic.003G113700 expressed protein -
11 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
12 Sobic.002G017800 expressed protein -
13 Sobic.010G066601 - -
14 Sobic.007G087200 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.005G196800 membrane protein, putative, expressed -
16 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
17 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
18 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.005G093000 - -
20 Sobic.001G500000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G107400 Sobic001G107400 Sobic002G245100 Sobic002G245100 Sobic001G107400--Sobic002G245100 Sobic004G187900 Sobic004G187900 Sobic001G107400--Sobic004G187900 Sobic003G037800 Sobic003G037800 Sobic001G107400--Sobic003G037800 Sobic009G141800 Sobic009G141800 Sobic001G107400--Sobic009G141800 Sobic003G429000 Sobic003G429000 Sobic001G107400--Sobic003G429000 Sobic005G018700 Sobic005G018700 Sobic001G107400--Sobic005G018700 Sobic001G281400 Sobic001G281400 Sobic001G107400--Sobic001G281400 Sobic004G321300 Sobic004G321300 Sobic001G107400--Sobic004G321300 Sobic009G159400 Sobic009G159400 Sobic001G107400--Sobic009G159400 Sobic002G245100--Sobic005G018700 Sobic002G245100--Sobic003G037800 Sobic004G237800 Sobic004G237800 Sobic002G245100--Sobic004G237800 Sobic002G202600 Sobic002G202600 Sobic002G245100--Sobic002G202600 Sobic005G196800 Sobic005G196800 Sobic002G245100--Sobic005G196800 Sobic004G340900 Sobic004G340900 Sobic002G245100--Sobic004G340900 Sobic002G245100--Sobic004G321300 Sobic003G158500 Sobic003G158500 Sobic002G245100--Sobic003G158500 Sobic002G245100--Sobic001G107400 Sobic004G187900--Sobic001G281400 Sobic001G124600 Sobic001G124600 Sobic004G187900--Sobic001G124600 Sobic002G140400 Sobic002G140400 Sobic004G187900--Sobic002G140400 Sobic004G187900--Sobic009G141800 Sobic004G187900--Sobic004G321300 Sobic003G350300 Sobic003G350300 Sobic004G187900--Sobic003G350300 Sobic009G008900 Sobic009G008900 Sobic004G187900--Sobic009G008900 Sobic001G477300 Sobic001G477300 Sobic004G187900--Sobic001G477300 Sobic008G136400 Sobic008G136400 Sobic004G187900--Sobic008G136400 Sobic003G037800--Sobic003G429000 Sobic003G037800--Sobic002G245100 Sobic001G389000 Sobic001G389000 Sobic003G037800--Sobic001G389000 Sobic009G033700 Sobic009G033700 Sobic003G037800--Sobic009G033700 Sobic003G037800--Sobic009G159400 Sobic003G037800--Sobic005G018700 Sobic006G183400 Sobic006G183400 Sobic003G037800--Sobic006G183400 Sobic003G037800--Sobic004G321300 Sobic003G037800--Sobic004G340900 Sobic006G267200 Sobic006G267200 Sobic009G141800--Sobic006G267200 Sobic010G086200 Sobic010G086200 Sobic009G141800--Sobic010G086200 Sobic003G393900 Sobic003G393900 Sobic009G141800--Sobic003G393900 Sobic004G065500 Sobic004G065500 Sobic009G141800--Sobic004G065500 Sobic009G141800--Sobic004G187900 Sobic009G141800--Sobic001G281400 Sobic009G141800--Sobic009G008900 Sobic003G387000 Sobic003G387000 Sobic009G141800--Sobic003G387000 Sobic001G459800 Sobic001G459800 Sobic009G141800--Sobic001G459800 Sobic003G429000--Sobic003G037800 Sobic003G429000--Sobic005G018700 Sobic001G050100 Sobic001G050100 Sobic003G429000--Sobic001G050100 Sobic003G429000--Sobic001G389000 Sobic002G329000 Sobic002G329000 Sobic003G429000--Sobic002G329000 Sobic003G429000--Sobic002G245100 Sobic003G429000--Sobic009G159400 Sobic007G184600 Sobic007G184600 Sobic003G429000--Sobic007G184600 Sobic002G175100 Sobic002G175100 Sobic003G429000--Sobic002G175100 Sobic005G018700--Sobic002G245100 Sobic002G017800 Sobic002G017800 Sobic005G018700--Sobic002G017800 Sobic006G103000 Sobic006G103000 Sobic005G018700--Sobic006G103000 Sobic010G185000 Sobic010G185000 Sobic005G018700--Sobic010G185000 Sobic005G018700--Sobic003G429000 Sobic005G018700--Sobic003G037800 Sobic005G018700--Sobic004G340900 Sobic005G018700--Sobic001G050100 Sobic003G192100 Sobic003G192100 Sobic005G018700--Sobic003G192100 Sobic001G281400--Sobic004G187900 Sobic002G267500 Sobic002G267500 Sobic001G281400--Sobic002G267500 Sobic010G149300 Sobic010G149300 Sobic001G281400--Sobic010G149300 Sobic002G190900 Sobic002G190900 Sobic001G281400--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic001G281400--Sobic002G046100 Sobic001G281400--Sobic010G086200 Sobic001G281400--Sobic009G141800 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300 Sobic004G321300--Sobic004G237800 Sobic004G321300--Sobic009G159400 Sobic004G321300--Sobic008G136400 Sobic008G139600 Sobic008G139600 Sobic004G321300--Sobic008G139600 Sobic001G038900 Sobic001G038900 Sobic004G321300--Sobic001G038900 Sobic002G055700 Sobic002G055700 Sobic004G321300--Sobic002G055700 Sobic001G140900 Sobic001G140900 Sobic004G321300--Sobic001G140900 Sobic005G091500 Sobic005G091500 Sobic004G321300--Sobic005G091500 Sobic003G345100 Sobic003G345100 Sobic004G321300--Sobic003G345100 Sobic009G159400--Sobic001G038900 Sobic001G435000 Sobic001G435000 Sobic009G159400--Sobic001G435000 Sobic009G159400--Sobic004G321300 Sobic009G159400--Sobic003G345100 Sobic004G208700 Sobic004G208700 Sobic009G159400--Sobic004G208700 Sobic009G159400--Sobic001G140900 Sobic008G050600 Sobic008G050600 Sobic009G159400--Sobic008G050600 Sobic010G259600 Sobic010G259600 Sobic009G159400--Sobic010G259600 Sobic009G159400--Sobic004G237800
Octagon: transcription factors


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